diff options
Diffstat (limited to 'academic/STAR/STAR.SlackBuild')
| -rw-r--r-- | academic/STAR/STAR.SlackBuild | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/academic/STAR/STAR.SlackBuild b/academic/STAR/STAR.SlackBuild index aa89b2927f..d6f0453abe 100644 --- a/academic/STAR/STAR.SlackBuild +++ b/academic/STAR/STAR.SlackBuild @@ -63,9 +63,15 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# https://sources.debian.org/data/main/r/rna-star/2.6.0b+dfsg-1/debian/patches/reproducible.patch -# (with minor modification) -patch -p1 < $CWD/reproducible.patch +# for using shared, externally-installed htslib (as done on debian) +#rm -rf htslib +# from https://salsa.debian.org/med-team/rna-star/tree/master/debian/patches +#patch < $CWD/donotuse_own_htslib.patch + +# but Alex Dobin, the developer of STAR does not advise this due to hacks he made in htslib +# https://github.com/alexdobin/STAR/issues/351 +# https://github.com/alexdobin/STAR/issues/447 +#so let's forget about this for now cd source |