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authorbrobr <sborg63@disroot.org>2021-11-15 01:27:15 +0000
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2021-11-16 13:15:05 +0700
commit8a0d4c361306d8f2ec1b0a128a9cd6d589f6ff31 (patch)
treef3a2083ce851faf73acf786858042da65be3b5fc /academic
parentc85123441b4d32f9a332c0d826a492716ba5fc0c (diff)
downloadslackbuilds-8a0d4c361306d8f2ec1b0a128a9cd6d589f6ff31.tar.gz
academic/ViennaRNA: Updated to version 2.5.0
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/ViennaRNA/ViennaRNA.SlackBuild45
-rw-r--r--academic/ViennaRNA/ViennaRNA.info6
2 files changed, 28 insertions, 23 deletions
diff --git a/academic/ViennaRNA/ViennaRNA.SlackBuild b/academic/ViennaRNA/ViennaRNA.SlackBuild
index a1b82f6eef..68465ebbaa 100644
--- a/academic/ViennaRNA/ViennaRNA.SlackBuild
+++ b/academic/ViennaRNA/ViennaRNA.SlackBuild
@@ -25,7 +25,7 @@
cd $(dirname $0) ; CWD=$(pwd)
PRGNAM=ViennaRNA
-VERSION=${VERSION:-2.4.18}
+VERSION=${VERSION:-2.5.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}
@@ -105,24 +105,23 @@ find -L . \
# - SVM Z-score filter in RNALfold
# - GNU Scientific Library for RNApvmin
-cluster="" ; [ "${CLUSTER:-yes}" != "no" ] && cluster="--with-cluster"
-kinwalker="" ; [ "${KINWALKER:-yes}" != "no" ] && kinwalker="--with-kinwalker"
+cluster="" ; [ "${CLUSTER:-yes}" != "no" ] && cluster="--with-cluster"
+kinwalker="" ; [ "${KINWALKER:-yes}" != "no" ] && kinwalker="--with-kinwalker"
# Default enabled features:
-forester="" ; [ "${FORESTER:-yes}" != "yes" ] && forester="--without-forester"
-kinfold="" ; [ "${KINFOLD:-yes}" != "yes" ] && kinwalk="--without-kinfold"
-rnalocmin="" ; [ "${RNALOCMIN:-yes}" != "yes" ] && rnalocmin="--without-rnalocmin"
-perl="" ; [ "${PERL:-yes}" != "yes" ] && perl="--without-perl"
-
-python3="" ; [ "${PYTHON3:-yes}" != "yes" ] && python3="--without-python3"
-swig="" ; [ "${SWIG:-yes}" != "yes" ] && swig="--without-swig"
-simd="" ; [ "${SIMD:-yes}" != "yes" ] && simd="--disable-simd"
-lto="" ; [ "${LTO:-yes}" != "yes" ] && lto="--disable-lto"
-openmp="" ; [ "${OPENMP:-yes}" != "yes" ] && openmp="--disable-openmp"
-pthreads="" ; [ "${PTHREADS:-yes}" != "yes" ] && pthreads="--disable-pthreads"
-svm="" ; [ "${SVM:-yes}" != "yes" ] && svm="--without-svm"
-gsl="" ; [ "${GSL:-yes}" != "yes" ] && gsl="--without-gsl"
-# Default to python3 (above) only;
-python="" ; [ "${PYTHON:-no}" != "yes" ] && python="--without-python"
+forester="" ; [ "${FORESTER:-yes}" != "no" ] && forester="--with-forester"
+kinfold="" ; [ "${KINFOLD:-yes}" != "no" ] && kinwalk="--with-kinfold"
+rnalocmin="" ; [ "${RNALOCMIN:-yes}" != "no" ] && rnalocmin="--with-rnalocmin"
+perl="" ; [ "${PERL:-yes}" != "no" ] && perl="--with-perl"
+# python = python3
+python="" ; [ "${PYTHON:-yes}" != "no" ] && python="--with-python"
+swig="" ; [ "${SWIG:-yes}" != "no" ] && swig="--with-swig"
+simd="" ; [ "${SIMD:-yes}" != "no" ] && simd="--enable-simd"
+lto="" ; [ "${LTO:-yes}" != "no" ] && lto="--enable-lto"
+openmp="" ; [ "${OPENMP:-yes}" != "no" ] && openmp="--enable-openmp"
+pthreads="" ; [ "${PTHREADS:-yes}" != "no" ] && pthreads="--enable-pthreads"
+svm="" ; [ "${SVM:-yes}" != "no" ] && svm="--with-svm"
+gsl="" ; [ "${GSL:-yes}" != "no" ] && gsl="--with-gsl"
+json="" ; [ "${JSON:-yes}" != "no" ] && json="--with-json"
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
@@ -132,6 +131,11 @@ CXXFLAGS="$SLKCFLAGS" \
--mandir=/usr/man \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--build=$ARCH-slackware-linux \
+ --with-python2=no \
+ --with-doc=no \
+ $cluster \
+ $kinwalker \
+ $forester \
$cluster \
$kinwalker \
$forester \
@@ -139,14 +143,15 @@ CXXFLAGS="$SLKCFLAGS" \
$rnalocmin \
$perl \
$python \
- $python3 \
$swig \
$simd \
$lto \
$openmp \
$pthreads \
$svm \
- $gsl || exit 1
+ $gsl \
+ $json \
+ || exit 1
make
make install DESTDIR=$PKG
diff --git a/academic/ViennaRNA/ViennaRNA.info b/academic/ViennaRNA/ViennaRNA.info
index d87661b196..f4a91c9d7e 100644
--- a/academic/ViennaRNA/ViennaRNA.info
+++ b/academic/ViennaRNA/ViennaRNA.info
@@ -1,8 +1,8 @@
PRGNAM="ViennaRNA"
-VERSION="2.4.18"
+VERSION="2.5.0"
HOMEPAGE="https://www.tbi.univie.ac.at/RNA"
-DOWNLOAD="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ViennaRNA-2.4.18.tar.gz"
-MD5SUM="902ac85cff08fc4b7d89a63786a18ca3"
+DOWNLOAD="https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_5_x/ViennaRNA-2.5.0.tar.gz"
+MD5SUM="48be55f33d08d01b4778ab78eec51a69"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""