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authorPetar Petrov <slackalaxy@gmail.com>2020-09-15 08:26:50 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2020-09-15 08:26:50 +0700
commit789435221bf74332c4b3a54f50e170845bb97ec6 (patch)
treeb26a098cd00d06c057ac4add2f2482ecdbbe047b /academic
parente8ca977a323bf506083d2bcda48079b6534742e5 (diff)
downloadslackbuilds-789435221bf74332c4b3a54f50e170845bb97ec6.tar.gz
academic/PhyMLR: Updated for version 3.3.20200621.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/PhyML/PhyML.SlackBuild12
-rw-r--r--academic/PhyML/PhyML.info6
2 files changed, 10 insertions, 8 deletions
diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild
index bddb063c00..893454e123 100644
--- a/academic/PhyML/PhyML.SlackBuild
+++ b/academic/PhyML/PhyML.SlackBuild
@@ -25,7 +25,7 @@
# Thanks to Niels Horn for some handy modifications and corrections.
PRGNAM=PhyML
-VERSION=${VERSION:-3.3.20190909}
+VERSION=${VERSION:-3.3.20200621}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -89,7 +89,9 @@ find -L . \
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
-CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
+# The -mfma flag is needed for building on 14.2. Help is from here:
+# https://github.com/horovod/horovod/issues/1832
+CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
# This is PhyML MPI. If you do not want it, comment the lines below. Then you do
@@ -108,7 +110,7 @@ make install DESTDIR=$PKG
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
-CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
+CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
# This is Phyrex
@@ -126,7 +128,7 @@ make install DESTDIR=$PKG
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
-CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
+CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
# This is PhyTime
@@ -144,7 +146,7 @@ make install DESTDIR=$PKG
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile
-CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" make
+CFLAGS="$SLKCFLAGS -mfma" CXXFLAGS="$SLKCFLAGS -mfma" make
make install DESTDIR=$PKG
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info
index f44eaca3de..ec04310e99 100644
--- a/academic/PhyML/PhyML.info
+++ b/academic/PhyML/PhyML.info
@@ -1,8 +1,8 @@
PRGNAM="PhyML"
-VERSION="3.3.20190909"
+VERSION="3.3.20200621"
HOMEPAGE="https://github.com/stephaneguindon/phyml/"
-DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20190909/phyml-3.3.20190909.tar.gz"
-MD5SUM="35698ff61c1db57b238f5b2d2cc784b3"
+DOWNLOAD="https://github.com/stephaneguindon/phyml/archive/v3.3.20200621/phyml-3.3.20200621.tar.gz"
+MD5SUM="12622e111c388bcb16696660033143b5"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="openmpi"