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authorPedro Mendes <pedro@gepasi.org>2016-11-30 20:51:14 +0000
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2016-12-03 07:17:45 +0700
commit004c02b09eddc21957004a908251de2e9926eaa4 (patch)
tree7f77dbdb218fe997151861c715b3eea9da745710 /academic
parentd20e4d268ae7a2f370b7e80e3d4f70e0085a0921 (diff)
downloadslackbuilds-004c02b09eddc21957004a908251de2e9926eaa4.tar.gz
academic/copasi: Updated for version 4.18.136.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/copasi/README18
-rw-r--r--academic/copasi/copasi.SlackBuild15
-rw-r--r--academic/copasi/copasi.info10
3 files changed, 22 insertions, 21 deletions
diff --git a/academic/copasi/README b/academic/copasi/README
index d8e33bc6bc..9039958d6d 100644
--- a/academic/copasi/README
+++ b/academic/copasi/README
@@ -1,16 +1,16 @@
COPASI is a package for modeling and simulation of biochemical networks,
popular in the field of systems biology.
-COPASI is a stand-alone program that simulates models of biochemical
-networks using ODE solvers or Gillespie's stochastic simulation
-algorithm. COPASI is compatible with models in SBML format. It also
-performs several analyses, such as steady state, stability, parameter
-sensitivity, elementary modes, Lyapunov exponents, optimization, and
-parameter estimation. Data can be visualized in plots, histograms and
-animations of network diagrams. COPASI's GUI is based on QT, but a
-command line version is also included that allows for processing
+COPASI is a stand-alone program that simulates models of biochemical
+networks using ODE solvers or Gillespie's stochastic simulation
+algorithm. COPASI is compatible with models in SBML format. It also
+performs several analyses, such as steady state, stability, parameter
+sensitivity, elementary modes, Lyapunov exponents, optimization, and
+parameter estimation. Data can be visualized in plots, histograms and
+animations of network diagrams. COPASI's GUI is based on QT, but a
+command line version is also included that allows for processing
computations in batch mode.
COPASI is a collaboration between research groups at the Biocomplexity
Institute at Virginia Tech, University of Heidelberg, University of
-Connecticut, University of Manchester, and previously the EML-Research.
+Connecticut, University of Manchester and previously the EML-Research.
diff --git a/academic/copasi/copasi.SlackBuild b/academic/copasi/copasi.SlackBuild
index 58752ab156..d1ccc96a61 100644
--- a/academic/copasi/copasi.SlackBuild
+++ b/academic/copasi/copasi.SlackBuild
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=copasi
-VERSION=${VERSION:-4.17.135}
+VERSION=${VERSION:-4.18.136}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -43,7 +43,7 @@ if [ "$ARCH" = "i586" ]; then
elif [ "$ARCH" = "x86_64" ]; then
BINNAME="Linux-64bit"
else
- echo "$ARCH is not supported by the $PRGNAM build script."
+ echo "$ARCH is not supported by the $PRGNAM build script..."
exit 1
fi
@@ -55,15 +55,16 @@ set -e
rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
-rm -rf COPASI-$VERSION-$BINNAME
+rm -rf COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
tar xvf $CWD/COPASI-$VERSION-$BINNAME.tar.gz
-cd COPASI-$VERSION-$BINNAME
+mv COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
+cd $PRGNAM-$VERSION
chown -R root:root .
find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
- -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications}
cp -a bin/* $PKG/usr/bin/
diff --git a/academic/copasi/copasi.info b/academic/copasi/copasi.info
index a16000eb04..72bf70f11b 100644
--- a/academic/copasi/copasi.info
+++ b/academic/copasi/copasi.info
@@ -1,10 +1,10 @@
PRGNAM="copasi"
-VERSION="4.17.135"
+VERSION="4.18.136"
HOMEPAGE="http://www.copasi.org"
-DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-32bit.tar.gz"
-MD5SUM="d3d03eb1e4b24613d930b9b2adec5ee7"
-DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-64bit.tar.gz"
-MD5SUM_x86_64="af6285199dcf877ad3450333c2b93201"
+DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-32bit.tar.gz"
+MD5SUM="95e2fe76b8af522de162aff2f227ea78"
+DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-64bit.tar.gz"
+MD5SUM_x86_64="ab43c0852be21f335ec77d71122a08f4"
REQUIRES=""
MAINTAINER="Pedro Mendes"
EMAIL="pedro@gepasi.org"