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| author | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-02-06 03:34:25 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-02-06 03:36:48 +0700 |
| commit | 55988a5e807679e0904abd9af1d08fa66570d655 (patch) | |
| tree | 9bd859394f09ef1e3433c1f7adc20a0c6d51c807 /academic/tophat/tophat.SlackBuild | |
| parent | f6f216c1eac5f0d862ac433b5195babeebb33259 (diff) | |
| download | slackbuilds-55988a5e807679e0904abd9af1d08fa66570d655.tar.gz | |
academic/tophat: Fix Build.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/tophat/tophat.SlackBuild')
| -rw-r--r-- | academic/tophat/tophat.SlackBuild | 24 |
1 files changed, 20 insertions, 4 deletions
diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild index 4d4d306fc8..44ec838590 100644 --- a/academic/tophat/tophat.SlackBuild +++ b/academic/tophat/tophat.SlackBuild @@ -62,25 +62,41 @@ cd $TMP rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION +tar xvf $CWD/seqan-v1.4.2.tar.gz chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -CFLAGS="$SLKCFLAGS" \ +sed -e 's|-gdwarf-2||' \ + -e '/define.*esyscmd/d' \ + -e 's/svnversion/Unversioned directory/' \ + -i configure.ac + +sed -e 's|make $(SAMPROG)|make -e $(SAMPROG)|' \ + -i src/Makefile.am + +# fixes seqan issues, Thanks to ARCH +rm -rf src/SeqAn-1.3 +patch -p1 < $CWD/fix_build_w_seqan1.4.patch +sed -e "s|-I./SeqAn-1.3|-I$TMP/$PRGNAM-$VERSION/seqan-seqan-v1.4.2/core/include|" configure.ac + +autoreconf -fi +CFLAGS="$SLKCFLAGS -I$TMP/$PRGNAM-$VERSION/seqan-seqan-v1.4.2/core/include" \ CXXFLAGS="$SLKCFLAGS" \ ./configure \ --prefix=/usr \ --libdir=/usr/lib${LIBDIRSUFFIX} \ --sysconfdir=/etc \ - --with-boost-libdir=/usr/lib${LIBDIRSUFFIX} \ --localstatedir=/var \ --mandir=/usr/man \ --build=$ARCH-slackware-linux -make +sed -i 's|-L/usr/lib||' Makefile src/Makefile + +make -j1 make install DESTDIR=$PKG find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ |