academic/suitesparse: Added (collection of sparse matrix libraries)

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>

1 files changed, 354 insertions, 0 deletions

diff --git a/academic/suitesparse/UFconfig.mk b/academic/suitesparse/UFconfig.mk
new file mode 100644
index 0000000000..fba2a1c875
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+++ b/academic/suitesparse/UFconfig.mk
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+#===============================================================================
+# UFconfig.mk:  common configuration file for the SuiteSparse
+#===============================================================================
+
+# This file contains all configuration settings for all packages authored or
+# co-authored by Tim Davis at the University of Florida:
+#
+# Package Version       Description
+# ------- -------       -----------
+# AMD	  1.2 or later  approximate minimum degree ordering
+# COLAMD  2.4 or later  column approximate minimum degree ordering
+# CCOLAMD 1.0 or later  constrained column approximate minimum degree ordering
+# CAMD    any		constrained approximate minimum degree ordering
+# UMFPACK 4.5 or later	sparse LU factorization, with the BLAS
+# CHOLMOD any		sparse Cholesky factorization, update/downdate
+# KLU	  0.8 or later  sparse LU factorization, BLAS-free
+# BTF	  0.8 or later  permutation to block triangular form
+# LDL	  1.2 or later	concise sparse LDL'
+# LPDASA  any		linear program solve (dual active set algorithm)
+# CXSparse any		extended version of CSparse (int/long, real/complex)
+# SuiteSparseQR	any	sparse QR factorization
+#
+# The UFconfig directory and the above packages should all appear in a single
+# directory, in order for the Makefile's within each package to find this file.
+#
+# To enable an option of the form "# OPTION = ...", edit this file and
+# delete the "#" in the first column of the option you wish to use.
+
+#------------------------------------------------------------------------------
+# Generic configuration
+#------------------------------------------------------------------------------
+
+# C compiler and compiler flags:  These will normally not give you optimal
+# performance.  You should select the optimization parameters that are best
+# for your system.  On Linux, use "CFLAGS = -O3 -fexceptions" for example.
+CC = cc
+# CFLAGS = -O   (for example; see below for details)
+
+# C++ compiler (also uses CFLAGS)
+CPLUSPLUS = g++
+
+# ranlib, and ar, for generating libraries
+RANLIB = ranlib
+AR = ar cr
+
+# delete and rename a file
+RM = rm -f
+MV = mv -f
+
+# Fortran compiler (not normally required)
+F77 = gfortran
+F77FLAGS = -O
+F77LIB =
+
+# C and Fortran libraries
+LIB = -lm
+
+# For compiling MATLAB mexFunctions (MATLAB 7.5 or later)
+MEX = mex -O -largeArrayDims -lmwlapack -lmwblas
+
+# For compiling MATLAB mexFunctions (MATLAB 7.3 and 7.4)
+# MEX = mex -O -largeArrayDims -lmwlapack
+
+# For MATLAB 7.2 or earlier, you must use one of these options:
+# MEX = mex -O -lmwlapack
+# MEX = mex -O
+
+# Which version of MAKE you are using (default is "make")
+# MAKE = make
+# MAKE = gmake
+
+#------------------------------------------------------------------------------
+# BLAS and LAPACK configuration:
+#------------------------------------------------------------------------------
+
+# UMFPACK and CHOLMOD both require the BLAS.  CHOLMOD also requires LAPACK.
+# See Kazushige Goto's BLAS at http://www.cs.utexas.edu/users/flame/goto/ or
+# http://www.tacc.utexas.edu/~kgoto/ for the best BLAS to use with CHOLMOD.
+# LAPACK is at http://www.netlib.org/lapack/ .  You can use the standard
+# Fortran LAPACK along with Goto's BLAS to obtain very good performance.
+# CHOLMOD gets a peak numeric factorization rate of 3.6 Gflops on a 3.2 GHz
+# Pentium 4 (512K cache, 4GB main memory) with the Goto BLAS, and 6 Gflops
+# on a 2.5Ghz dual-core AMD Opteron.
+
+# These settings will probably not work, since there is no fixed convention for
+# naming the BLAS and LAPACK library (*.a or *.so) files.
+
+# Using the Goto BLAS:
+# BLAS = -lgoto -lgfortran -lgfortranbegin -lg2c
+
+# This is probably slow ... it might connect to the Standard Reference BLAS:
+BLAS = -lblas -lgfortran -lgfortranbegin 
+LAPACK = -llapack
+
+# Using non-optimized versions:
+# BLAS = -lblas_plain -lgfortran -lgfortranbegin -lg2c
+# LAPACK = -llapack_plain
+
+# The BLAS might not contain xerbla, an error-handling routine for LAPACK and
+# the BLAS.  Also, the standard xerbla requires the Fortran I/O library, and
+# stops the application program if an error occurs.  A C version of xerbla
+# distributed with this software (UFconfig/xerbla/libcerbla.a) includes a
+# Fortran-callable xerbla routine that prints nothing and does not stop the
+# application program.  This is optional.
+# XERBLA = ../../UFconfig/xerbla/libcerbla.a 
+
+# If you wish to use the XERBLA in LAPACK and/or the BLAS instead,
+# use this option:
+XERBLA = 
+
+# If you wish to use the Fortran UFconfig/xerbla/xerbla.f instead, use this:
+# XERBLA = ../../UFconfig/xerbla/libxerbla.a 
+
+#------------------------------------------------------------------------------
+# METIS, optionally used by CHOLMOD
+#------------------------------------------------------------------------------
+
+# If you do not have METIS, or do not wish to use it in CHOLMOD, you must
+# compile CHOLMOD with the -DNPARTITION flag.  You must also use the
+# "METIS =" option, below.
+
+# The path is relative to where it is used, in CHOLMOD/Lib, CHOLMOD/MATLAB, etc.
+# You may wish to use an absolute path.  METIS is optional.  Compile
+# CHOLMOD with -DNPARTITION if you do not wish to use METIS.
+#METIS_PATH = ../../metis-4.0
+#METIS = ../../metis-4.0/libmetis.a
+
+# If you use CHOLMOD_CONFIG = -DNPARTITION then you must use the following
+# options:
+METIS_PATH =
+METIS =
+
+#------------------------------------------------------------------------------
+# UMFPACK configuration:
+#------------------------------------------------------------------------------
+
+# Configuration flags for UMFPACK.  See UMFPACK/Source/umf_config.h for details.
+#
+# -DNBLAS	do not use the BLAS.  UMFPACK will be very slow.
+# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by
+#  		LAPACK and the BLAS (defaults to 'int')
+# -DNSUNPERF	do not use the Sun Perf. Library (default is use it on Solaris)
+# -DNPOSIX	do not use POSIX routines sysconf and times.
+# -DGETRUSAGE	use getrusage
+# -DNO_TIMER	do not use any timing routines
+# -DNRECIPROCAL	do not multiply by the reciprocal
+# -DNO_DIVIDE_BY_ZERO	do not divide by zero
+
+UMFPACK_CONFIG = 
+
+#------------------------------------------------------------------------------
+# CHOLMOD configuration
+#------------------------------------------------------------------------------
+
+# CHOLMOD Library Modules, which appear in libcholmod.a:
+# Core		requires: none
+# Check		requires: Core
+# Cholesky	requires: Core, AMD, COLAMD.  optional: Partition, Supernodal
+# MatrixOps	requires: Core
+# Modify	requires: Core
+# Partition	requires: Core, CCOLAMD, METIS.  optional: Cholesky
+# Supernodal	requires: Core, BLAS, LAPACK
+#
+# CHOLMOD test/demo Modules (all are GNU GPL, do not appear in libcholmod.a):
+# Tcov		requires: Core, Check, Cholesky, MatrixOps, Modify, Supernodal
+#		optional: Partition
+# Valgrind	same as Tcov
+# Demo		requires: Core, Check, Cholesky, MatrixOps, Supernodal
+#		optional: Partition
+#
+# Configuration flags:
+# -DNCHECK	    do not include the Check module.	   License GNU LGPL
+# -DNCHOLESKY	    do not include the Cholesky module.	   License GNU LGPL
+# -DNPARTITION	    do not include the Partition module.   License GNU LGPL
+#		    also do not include METIS.
+# -DNGPL	    do not include any GNU GPL Modules in the CHOLMOD library:
+# -DNMATRIXOPS	    do not include the MatrixOps module.   License GNU GPL
+# -DNMODIFY	    do not include the Modify module.      License GNU GPL
+# -DNSUPERNODAL     do not include the Supernodal module.  License GNU GPL
+#
+# -DNPRINT	    do not print anything.
+# -D'LONGBLAS=long' or -DLONGBLAS='long long' defines the integers used by
+#  		    	LAPACK and the BLAS (defaults to 'int')
+# -DNSUNPERF	    for Solaris only.  If defined, do not use the Sun
+#			Performance Library
+
+CHOLMOD_CONFIG = -DNPARTITION
+
+#------------------------------------------------------------------------------
+# SuiteSparseQR configuration:
+#------------------------------------------------------------------------------
+
+# The SuiteSparseQR library can be compiled with the following options:
+#
+# -DNPARTITION      do not include the CHOLMOD partition module
+# -DNEXPERT         do not include the functions in SuiteSparseQR_expert.cpp
+# -DTIMING          enable timing and flop counts
+# -DHAVE_TBB        enable the use of Intel's Threading Building Blocks (TBB)
+
+# default, without timing, without TBB:
+SPQR_CONFIG = -DNPARTITION
+# with timing and TBB:
+# SPQR_CONFIG = -DTIMING -DHAVE_TBB
+# with timing
+# SPQR_CONFIG = -DTIMING
+
+# with TBB, you must select this:
+# TBB = -ltbb
+# without TBB:
+TBB =
+
+# with timing, you must include the timing library:
+# RTLIB = -lrt
+# without timing
+RTLIB =
+
+#------------------------------------------------------------------------------
+# Linux
+#------------------------------------------------------------------------------
+
+# Using default compilers:
+# CC = gcc
+CFLAGS = -O3 -fexceptions
+
+# alternatives:
+# CFLAGS = -g -fexceptions \
+   	-Wall -W -Wshadow -Wmissing-prototypes -Wstrict-prototypes \
+    	-Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi
+# CFLAGS = -O3 -fexceptions \
+   	-Wall -W -Werror -Wshadow -Wmissing-prototypes -Wstrict-prototypes \
+    	-Wredundant-decls -Wnested-externs -Wdisabled-optimization -ansi
+# CFLAGS = -O3 -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE
+# CFLAGS = -O3
+# CFLAGS = -O3 -g -fexceptions
+# CFLAGS = -g -fexceptions \
+   	-Wall -W -Wshadow \
+    	-Wredundant-decls -Wdisabled-optimization -ansi
+
+# consider:
+# -fforce-addr -fmove-all-movables -freduce-all-givs -ftsp-ordering
+# -frename-registers -ffast-math -funroll-loops
+
+# Using the Goto BLAS:
+# BLAS = -lgoto -lfrtbegin -lg2c $(XERBLA) -lpthread
+
+# Using Intel's icc and ifort compilers:
+#   (does not work for mexFunctions unless you add a mexopts.sh file)
+# F77 = ifort
+# CC = icc
+# CFLAGS = -O3 -xN -vec_report=0
+# CFLAGS = -g
+# old (broken): CFLAGS = -ansi -O3 -ip -tpp7 -xW -vec_report0
+
+# 64bit:
+# F77FLAGS = -O -m64
+# CFLAGS = -O3 -fexceptions -m64
+# BLAS = -lgoto64 -lfrtbegin -lg2c -lpthread $(XERBLA)
+# LAPACK = -llapack64
+
+
+# SUSE Linux 10.1, AMD Opteron, with GOTO Blas
+# F77 = gfortran
+# BLAS = -lgoto_opteron64 -lgfortran
+
+# SUSE Linux 10.1, Intel Pentium, with GOTO Blas
+# F77 = gfortran
+# BLAS = -lgoto -lgfortran
+
+#------------------------------------------------------------------------------
+# Solaris
+#------------------------------------------------------------------------------
+
+# 32-bit
+# CFLAGS = -KPIC -dalign -xc99=%none -Xc -xlibmieee -xO5 -xlibmil -m32
+
+# 64-bit
+# CFLAGS = -fast -KPIC -xc99=%none -xlibmieee -xlibmil -m64 -Xc
+
+# FFLAGS = -fast -KPIC -dalign -xlibmil -m64
+
+# The Sun Performance Library includes both LAPACK and the BLAS:
+# BLAS = -xlic_lib=sunperf
+# LAPACK =
+
+
+#------------------------------------------------------------------------------
+# Compaq Alpha
+#------------------------------------------------------------------------------
+
+# 64-bit mode only
+# CFLAGS = -O2 -std1
+# BLAS = -ldxml
+# LAPACK =
+
+#------------------------------------------------------------------------------
+# Macintosh
+#------------------------------------------------------------------------------
+
+# CC = gcc
+# CFLAGS = -O3 -fno-common -no-cpp-precomp -fexceptions
+# LIB = -lstdc++
+# BLAS = -framework Accelerate
+# LAPACK = -framework Accelerate
+
+#------------------------------------------------------------------------------
+# IBM RS 6000
+#------------------------------------------------------------------------------
+
+# BLAS = -lessl
+# LAPACK =
+
+# 32-bit mode:
+# CFLAGS   = -O4 -qipa -qmaxmem=16384 -qproto
+# F77FLAGS = -O4 -qipa -qmaxmem=16384
+
+# 64-bit mode:
+# CFLAGS   = -O4 -qipa -qmaxmem=16384 -q64 -qproto
+# F77FLAGS = -O4 -qipa -qmaxmem=16384 -q64
+# AR = ar -X64
+
+#------------------------------------------------------------------------------
+# SGI IRIX
+#------------------------------------------------------------------------------
+
+# BLAS = -lscsl
+# LAPACK =
+
+# 32-bit mode
+# CFLAGS = -O
+
+# 64-bit mode (32 bit int's and 64-bit long's):
+# CFLAGS = -64
+# F77FLAGS = -64
+
+# SGI doesn't have ranlib
+# RANLIB = echo
+
+#------------------------------------------------------------------------------
+# AMD Opteron (64 bit)
+#------------------------------------------------------------------------------
+
+# BLAS = -lgoto_opteron64 -lg2c
+# LAPACK = -llapack_opteron64
+
+# SUSE Linux 10.1, AMD Opteron
+# F77 = gfortran
+# BLAS = -lgoto_opteron64 -lgfortran
+# LAPACK = -llapack_opteron64
+
+#------------------------------------------------------------------------------
+# remove object files and profile output
+#------------------------------------------------------------------------------
+
+CLEAN = *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno