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| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2015-02-04 19:55:11 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2015-02-05 06:31:08 +0700 |
| commit | f5d420b2c11834e4ac0fd724798de3c1bafb2033 (patch) | |
| tree | 1f2ed9a67ff959195fffccd96969340117c1d56b /academic/spidey/README | |
| parent | f19056b3ef54d849564328cce89285c03f53db7c (diff) | |
| download | slackbuilds-f5d420b2c11834e4ac0fd724798de3c1bafb2033.tar.gz | |
academic/spidey: Added x86_64 source.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/spidey/README')
| -rw-r--r-- | academic/spidey/README | 22 |
1 files changed, 14 insertions, 8 deletions
diff --git a/academic/spidey/README b/academic/spidey/README index 0912181c25..6e7c198210 100644 --- a/academic/spidey/README +++ b/academic/spidey/README @@ -1,9 +1,15 @@ -Spidey is an mRNA-to-genomic alignment program. For a complete -description of how Spidey works, visit -http://www.ncbi.nlm.nih.gov/spidey/spideydoc.html. +Spidey: an mRNA-to-genomic alignment program. -This is just repackaging of the ready binary for x86 and will not run -on x86_64. It will probably work just fine on a Slackware multilib -box, but we do not support that ;). If you want to build spidey from -source, you should download and compile the NCBI toolkit. For more -information: http://www.ncbi.nlm.nih.gov/spidey/spideysource.html +Spidey is a tool for aligning one or more mRNA sequences to a given +genomic sequence. It was written with two main goals in mind: +1) find good alignments regardless of intron size +2) avoid getting confused by nearby pseudogenes and paralogs. + +The following programs provide a GUI to run spidey: +-ugene +-perlprimer + +This is just repackaging of precompiled binaries: +- x86 platform: the executable is provided by upstream (NCBI). +- x86_64 platform: the executable is kindly provided by the UniPro +Ugene project, where it is part of their External Tools meta-package. |