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author | Petar Petrov <ppetrov@paju.oulu.fi> | 2012-12-14 18:50:19 +0100 |
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committer | Matteo Bernardini <ponce@slackbuilds.org> | 2012-12-15 15:13:38 +0100 |
commit | 0b841ae33af4b3b96d30cfabb56998f588aa9e8f (patch) | |
tree | 8e7ad5acb8306cef5e555b23b9276f7ecf38e4a1 /academic/seaview/README | |
parent | 486b19495c15a5eaf95d129a1e2e7070278c61d9 (diff) | |
download | slackbuilds-0b841ae33af4b3b96d30cfabb56998f588aa9e8f.tar.gz |
academic/seaview: Updated for version 4.4.0.
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/seaview/README')
-rw-r--r-- | academic/seaview/README | 16 |
1 files changed, 9 insertions, 7 deletions
diff --git a/academic/seaview/README b/academic/seaview/README index 24e334c55f..c73aa1a016 100644 --- a/academic/seaview/README +++ b/academic/seaview/README @@ -1,13 +1,13 @@ SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny. Important features are: -1) SeaView reads and writes various file formats (NEXUS, MSF, - CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences - and of phylogenetic trees. +1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, + FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of + phylogenetic trees. -2) SeaView drives programs muscle or clustalw for multiple sequence - alignment, and also allows to use any external alignment algorithm - able to read and write FASTA-formatted files. +2) SeaView drives programs muscle or Clustal Omega (clustalo) for + multiple sequence alignment, and also allows to use any external + alignment algorithm able to read and write FASTA-formatted files. 3) Seaview drives the Gblocks program to select blocks of evolutionarily conserved sites. @@ -18,7 +18,9 @@ sequence alignment and molecular phylogeny. Important features are: evolutionary distances, c) maximum likelihood, driving program PhyML 3.0. -5) SeaView draws phylogenetic trees on screen, PDF or PostScript files +5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or + PostScript files. + 6) SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet. |