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author | Petar Petrov <slackalaxy@gmail.com> | 2016-11-27 00:12:08 +0000 |
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committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-12-03 07:17:45 +0700 |
commit | baca6beb0c818a6727efd6b1e5b9552928bcc6a9 (patch) | |
tree | 351f9ab89cdfb384d6218a1a29395d27beb2933d /academic/HMMER/README | |
parent | 0bb3efdbaef7cd37a93473093ea666cb10ff832d (diff) | |
download | slackbuilds-baca6beb0c818a6727efd6b1e5b9552928bcc6a9.tar.gz |
academic/HMMER: Added (biosequence analysis).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/HMMER/README')
-rw-r--r-- | academic/HMMER/README | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/academic/HMMER/README b/academic/HMMER/README new file mode 100644 index 0000000000..7129424d65 --- /dev/null +++ b/academic/HMMER/README @@ -0,0 +1,19 @@ +HMMER: biosequence analysis using profile hidden Markov models + +HMMER is used for searching sequence databases for sequence homologs, +and for making sequence alignments. It implements methods using +probabilistic models called profile hidden Markov models (profile HMMs). + +HMMER is often used together with a profile database, such as Pfam or +many of the databases that participate in Interpro. But HMMER can also +work with query sequences, not just profiles, just like BLAST. For +example, you can search a protein query sequence against a database with +phmmer, or do an iterative search with jackhmmer. + +HMMER is designed to detect remote homologs as sensitively as possible, +relying on the strength of its underlying probability models. In the +past, this strength came at significant computational expense, but as +of the new HMMER3 project, HMMER is now essentially as fast as BLAST. + +Publications: +http://hmmer.org/publications.html |