academic/tabix: Removed.

Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>

4 files changed, 0 insertions, 140 deletions

diff --git a/academic/tabix/README b/academic/tabix/README
deleted file mode 100644
index 143a5d5684..0000000000
--- a/academic/tabix/README
+++ /dev/null
@@ -1,8 +0,0 @@
-Tabix indexes a TAB-delimited genome position file in.tab.bgz and
-creates an index file in.tab.bgz.tbi when region is absent from the
-command-line. The input data file must be position sorted and
-compressed by bgzip which has a gzip like interface. After indexing,
-tabix is able to quickly retrieve data lines overlapping regions
-specified in the format "chr:beginPos-endPos". Fast data retrieval
-also works over network if URI is given as a file name and in this
-case the index file will be downloaded if it is not present locally.
diff --git a/academic/tabix/slack-desc b/academic/tabix/slack-desc
deleted file mode 100644
index 5a387152f0..0000000000
--- a/academic/tabix/slack-desc
+++ /dev/null
@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct.  It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
-     |-----handy-ruler------------------------------------------------------|
-tabix: tabix (Generic indexer for TAB-delimited genome position files)
-tabix:
-tabix: Tabix indexes a TAB-delimited genome position file in.tab.bgz
-tabix: and creates an index file in.tab.bgz.tbi when region is absent
-tabix: from the command-line. The input data file must be position
-tabix: sorted and compressed by bgzip which has a gzip like interface.
-tabix: Tabix is able to quickly retrieve data lines overlapping regions
-tabix: specified in the format "chr:beginPos-endPos".
-tabix:
-tabix: Home: http://samtools.sourceforge.net/tabix.shtml
-tabix:
diff --git a/academic/tabix/tabix.SlackBuild b/academic/tabix/tabix.SlackBuild
deleted file mode 100644
index 017733aaa0..0000000000
--- a/academic/tabix/tabix.SlackBuild
+++ /dev/null
@@ -1,103 +0,0 @@
-#!/bin/sh
-
-# Slackware build script for tabix
-
-# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-#    notice, this list of conditions and the following disclaimer.
-#
-#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
-#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-PRGNAM=tabix
-VERSION=${VERSION:-0.2.6}
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-
-if [ -z "$ARCH" ]; then
-  case "$( uname -m )" in
-    i?86) ARCH=i486 ;;
-    arm*) ARCH=arm ;;
-       *) ARCH=$( uname -m ) ;;
-  esac
-fi
-
-CWD=$(pwd)
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-if [ "$ARCH" = "i486" ]; then
-  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "i686" ]; then
-  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "x86_64" ]; then
-  SLKCFLAGS="-O2 -fPIC"
-  LIBDIRSUFFIX="64"
-else
-  SLKCFLAGS="-O2"
-  LIBDIRSUFFIX=""
-fi
-
-set -e
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $PRGNAM-$VERSION
-tar xvf $CWD/$PRGNAM-$VERSION.tar.bz2
-cd $PRGNAM-$VERSION
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-CFLAGS="$SLKCFLAGS" \
-CXXFLAGS="$SLKCFLAGS" \
-make
-
-# Install executables
-install -D -m755 tabix $PKG/usr/bin/tabix
-install -D -m755 bgzip $PKG/usr/bin/bgzip
-
-# Place manpage
-install -D -m644 $PRGNAM.1 $PKG/usr/man/man1/$PRGNAM.1
-
-# Include examples
-mkdir -p $PKG/usr/share/$PRGNAM
-cp -a example.gtf.gz example.gtf.gz.tbi $PKG/usr/share/$PRGNAM
-
-find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
-  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
-
-find $PKG/usr/man -type f -exec gzip -9 {} \;
-for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  ChangeLog NEWS \
-  $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/tabix/tabix.info b/academic/tabix/tabix.info
deleted file mode 100644
index bac2016304..0000000000
--- a/academic/tabix/tabix.info
+++ /dev/null
@@ -1,10 +0,0 @@
-PRGNAM="tabix"
-VERSION="0.2.6"
-HOMEPAGE="http://samtools.sourceforge.net/tabix.shtml"
-DOWNLOAD="http://sourceforge.net/projects/samtools/files/tabix/tabix-0.2.6.tar.bz2"
-MD5SUM="36a61ceac2f5bed36018434282bbcc5d"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
-REQUIRES=""
-MAINTAINER="Petar Petrov"
-EMAIL="slackalaxy@gmail.com"