summaryrefslogtreecommitdiff
path: root/academic/spades/References
blob: 7c9e1b455e720d838be24dd1dc45a97fcee2a0cb (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Related publications

    S. Nurk, A. Bankevich, D. Antipov, A. A. Gurevich, A. Korobeynikov, A. Lapidus, A. D. Prjibelsky, A. Pyshkin, A. Sirotkin, Y. Sirotkin, R. Stepanauskas, J. S. McLean, R. Lasken, S. R. Clingenpeel, T. Woyke, G. Tesler, M. A. Alekseyev, and P. A. Pevzner. Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. Journal of Computational Biology 20(10) (2013), 714-737. doi:10.1089/cmb.2013.0084

    Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, and Pavel A. Pevzner. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. Journal of Computational Biology 19(5) (2012), 455-477. doi:10.1089/cmb.2012.0021

    Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, and Max A. Alekseyev. Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. Journal of Computational Biology (2012). doi:10.1089/cmb.2012.0098

    Nikolay Vyahhi, Son K. Pham, and Pavel A. Pevzner. From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. Lecture Notes in Bioinformatics 7534 (2012), pp. 249-261. doi:10.1007/978-3-642-33122-0_20

    Sergey I. Nikolenko, Anton I. Korobeynikov and Max. A. Alekseyev. BayesHammer: Bayesian clustering for error correction in single-cell sequencing. BMC Genomics (2013) 14(S1):S7. doi:10.1186/1471-2164-14-S1-S7

    Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi, and Glenn Tesler. QUAST: quality assessment tool for genome assemblies. Bioinformatics 29(8), pp. 1072-1075. doi:10.1093/bioinformatics/btt086

    Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son Pham, Anton Korobeynikov, Alla Lapidus and Pavel A. Pevzner. ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinformatics (2014) 30 (12): i293-i301. doi: 10.1093/bioinformatics/btu266