From ee01967bd9709f28bf411ecf0735668b802d8432 Mon Sep 17 00:00:00 2001 From: "B. Watson" Date: Fri, 4 Mar 2022 11:43:50 -0500 Subject: libraries/trilinos: Removed (no dependees; conflicts with mpich and openmpi) Signed-off-by: Willy Sudiarto Raharjo --- libraries/trilinos/README | 21 --- libraries/trilinos/slack-desc | 19 -- .../trilinos/trilinos-12.4.2_lapack-3.6.0.patch | 87 --------- libraries/trilinos/trilinos.SlackBuild | 209 --------------------- libraries/trilinos/trilinos.info | 10 - 5 files changed, 346 deletions(-) delete mode 100644 libraries/trilinos/README delete mode 100644 libraries/trilinos/slack-desc delete mode 100644 libraries/trilinos/trilinos-12.4.2_lapack-3.6.0.patch delete mode 100644 libraries/trilinos/trilinos.SlackBuild delete mode 100644 libraries/trilinos/trilinos.info (limited to 'libraries/trilinos') diff --git a/libraries/trilinos/README b/libraries/trilinos/README deleted file mode 100644 index 98891cb2d2..0000000000 --- a/libraries/trilinos/README +++ /dev/null @@ -1,21 +0,0 @@ - The Trilinos Project is an effort to develop algorithms and enabling -technologies within an object-oriented software framework for the -solution of large-scale, complex multi-physics engineering and -scientific problems. A unique design feature of Trilinos is its focus -on packages. - -The package has two building methods, the default is for a single -system (without parallelism). - -* The trilinos can also be compiled against individual packages -(i.e. amd, umfpack and metis) outside of suitesparse.SlackBuild. -** The suitesparse.SlackBuild, doesn't build metis by default. -For that you can use the parMETIS.SlackBuild. -For more details about dependeces the Xyce webpage. -have a list of required depences. - -Optional dependences: -For enable parallelism set PARALLEL=yes. This requires the -ParMETIS library and a MPI implementation (openmpi or mpich). -To enable CUDA set CUDA=yes (Additional requirements: CUDA -SDK and CUSPARSE). diff --git a/libraries/trilinos/slack-desc b/libraries/trilinos/slack-desc deleted file mode 100644 index 5dc5e6bd62..0000000000 --- a/libraries/trilinos/slack-desc +++ /dev/null @@ -1,19 +0,0 @@ -# HOW TO EDIT THIS FILE: -# The "handy ruler" below makes it easier to edit a package description. -# Line up the first '|' above the ':' following the base package name, and -# the '|' on the right side marks the last column you can put a character in. -# You must make exactly 11 lines for the formatting to be correct. It's also -# customary to leave one space after the ':' except on otherwise blank lines. - - |-----handy-ruler------------------------------------------------------| -trilinos: trilinos (trilinos project) -trilinos: -trilinos: The Trilinos Project is an effort to develop algorithms and enabling -trilinos: technologies within an object-oriented software framework for the -trilinos: solution of large-scale, complex multi-physics engineering and -trilinos: scientific problems. A unique design feature of Trilinos is its focus -trilinos: on packages. -trilinos: -trilinos: -trilinos: -trilinos: diff --git a/libraries/trilinos/trilinos-12.4.2_lapack-3.6.0.patch b/libraries/trilinos/trilinos-12.4.2_lapack-3.6.0.patch deleted file mode 100644 index b91b43c436..0000000000 --- a/libraries/trilinos/trilinos-12.4.2_lapack-3.6.0.patch +++ /dev/null @@ -1,87 +0,0 @@ -diff -u -r trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK.cpp trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK.cpp ---- trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK.cpp 2015-10-06 15:43:00.000000000 +0100 -+++ trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK.cpp 2016-06-05 18:03:12.619388060 +0100 -@@ -365,8 +365,11 @@ - double* A, const int LDA, double* B, const int LDB, - double* ALPHA, double* BETA, double* U, const int LDU, double* V, const int LDV, double* Q, const int LDQ, double* WORK, int* IWORK, - int* INFO) const { -- DGGSVD_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB, -- ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, IWORK, INFO); -+ int LWORK; -+ LWORK = (3*N) > M ? 3*N : M; -+ LWORK = (LWORK > P ? LWORK : P) + N; -+ DGGSVD3_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB, -+ ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, &LWORK, IWORK, INFO); - } - - //============================================================================= -@@ -374,8 +377,11 @@ - float* A, const int LDA, float* B, const int LDB, - float* ALPHA, float* BETA, float* U, const int LDU, float* V, const int LDV, float* Q, const int LDQ, float* WORK, int* IWORK, - int* INFO) const { -- SGGSVD_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB, -- ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, IWORK, INFO); -+ int LWORK; -+ LWORK = (3*N) > M ? 3*N : M; -+ LWORK = (LWORK > P ? LWORK : P) + N; -+ SGGSVD3_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB, -+ ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, &LWORK, IWORK, INFO); - } - - //============================================================================= -diff -u -r trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK_wrappers.h trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK_wrappers.h ---- trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK_wrappers.h 2015-10-06 15:43:00.000000000 +0100 -+++ trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK_wrappers.h 2016-06-05 17:34:26.411666128 +0100 -@@ -73,7 +73,7 @@ - #define DGETRS_F77 SGETRS - #define DGGEV_F77 SGGEV - #define DGGLSE_F77 SGGLSE --#define DGGSVD_F77 SGGSVD -+#define DGGSVD3_F77 SGGSVD3 - #define DHSEQR_F77 SHSEQR - #define DLAIC1_F77 SLAIC1 - #define DLAMCH_F77 SLAMCH -@@ -172,7 +172,7 @@ - #define DGETRS_F77 F77_BLAS_MANGLE(dgetrs,DGETRS) - #define DGGEV_F77 F77_BLAS_MANGLE(dggev,DGGEV) - #define DGGLSE_F77 F77_BLAS_MANGLE(dgglse,DGGLSE) --#define DGGSVD_F77 F77_BLAS_MANGLE(dggsvd,DGGSVD) -+#define DGGSVD3_F77 F77_BLAS_MANGLE(dggsvd3,DGGSVD3) - #define DHSEQR_F77 F77_BLAS_MANGLE(dhseqr,DHSEQR) - #define DLAIC1_F77 F77_BLAS_MANGLE(dlaic1,DLAIC1) - #define DLAMCH_F77 F77_BLAS_MANGLE(dlamch,DLAMCH) -@@ -227,7 +227,7 @@ - #define SGETRS_F77 F77_BLAS_MANGLE(sgetrs,SGETRS) - #define SGGEV_F77 F77_BLAS_MANGLE(sggev,SGGEV) - #define SGGLSE_F77 F77_BLAS_MANGLE(sgglse,SGGLSE) --#define SGGSVD_F77 F77_BLAS_MANGLE(sggsvd,SGGSVD) -+#define SGGSVD3_F77 F77_BLAS_MANGLE(sggsvd3,SGGSVD3) - #define SHSEQR_F77 F77_BLAS_MANGLE(shseqr,SHSEQR) - #define SLAMCH_F77 F77_BLAS_MANGLE(slamch,SLAMCH) - #define SLARFT_F77 F77_BLAS_MANGLE(slarft,SLARFT) -@@ -302,10 +302,10 @@ - double * vr, const int * ldvr, double * work, const int * lwork, int * info); - void PREFIX DGGLSE_F77(const int * m, const int * n, const int * p, double * a, const int * lda, double * b, const int * ldb, - double * c, double * d, double * x, double * work, const int * lwork, int * info); -- void PREFIX DGGSVD_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l, -+ void PREFIX DGGSVD3_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l, - double * a, const int * lda, double * b, const int * ldb, double * alpha, double * beta, - double * u, const int * ldu, double * v, const int * ldv, double * q, const int * ldq, double * work, -- int * iwork, int * info); -+ int * lwork, int * iwork, int * info); - void PREFIX DHSEQR_F77(Epetra_fcd job, Epetra_fcd, const int * n, const int * ilo, const int * ihi, double * h, const int * ldh, - double * wr, double * wi, double * z, const int * ldz, double * work, const int * lwork, int * info); - double PREFIX DLAMCH_F77(Epetra_fcd); -@@ -407,10 +407,10 @@ - float * vr, const int * ldvr, float * work, const int * lwork, int * info); - void PREFIX SGGLSE_F77(const int * m, const int * n, const int * p, float * a, const int * lda, float * b, const int * ldb, - float * c, float * d, float * x, float * work, const int * lwork, int * info); -- void PREFIX SGGSVD_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l, -+ void PREFIX SGGSVD3_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l, - float * a, const int * lda, float * b, const int * ldb, float * alpha, float * beta, - float * u, const int * ldu, float * v, const int * ldv, float * q, const int * ldq, float * work, -- int * iwork, int * info); -+ int * lwork, int * iwork, int * info); - void PREFIX SHSEQR_F77(Epetra_fcd job, Epetra_fcd, const int * n, const int * ilo, const int * ihi, float * h, const int * ldh, - float * wr, float * wi, float * z, const int * ldz, float * work, const int * lwork, int * info); - float PREFIX SLAMCH_F77(Epetra_fcd); diff --git a/libraries/trilinos/trilinos.SlackBuild b/libraries/trilinos/trilinos.SlackBuild deleted file mode 100644 index e838c9670f..0000000000 --- a/libraries/trilinos/trilinos.SlackBuild +++ /dev/null @@ -1,209 +0,0 @@ -#!/bin/bash - -# Slackware build script for trilinos - -# Copyright 2015 Guilherme Calandrini - Madrid (Spain) -# All rights reserved. -# -# Redistribution and use of this script, with or without modification, is -# permitted provided that the following conditions are met: -# -# 1. Redistributions of this script must retain the above copyright -# notice, this list of conditions and the following disclaimer. -# -# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED -# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF -# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO -# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; -# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, -# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR -# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - -cd $(dirname $0) ; CWD=$(pwd) - -PRGNAM=trilinos -VERSION=${VERSION:-12.6.3} -BUILD=${BUILD:-1} -TAG=${TAG:-_SBo} -PKGTYPE=${PKGTYPE:-tgz} - -if [ -z "$ARCH" ]; then - case "$( uname -m )" in - i?86) ARCH=i486 ;; - arm*) ARCH=arm ;; - *) ARCH=$( uname -m ) ;; - esac -fi - -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. -if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then - echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" - exit 0 -fi - -TMP=${TMP:-/tmp/SBo} -PKG=$TMP/package-$PRGNAM -OUTPUT=${OUTPUT:-/tmp} - -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "i686" ]; then - SLKCFLAGS="-O2 -march=i686 -mtune=i686" - LIBDIRSUFFIX="" -elif [ "$ARCH" = "x86_64" ]; then - SLKCFLAGS="-O2 -fPIC" - LIBDIRSUFFIX="64" -else - SLKCFLAGS="-O2" - LIBDIRSUFFIX="" -fi - -set -e - -rm -rf $PKG -mkdir -p $TMP $PKG $OUTPUT -cd $TMP -rm -rf $PRGNAM-$VERSION-Source -tar jxvf $CWD/$PRGNAM-$VERSION-Source.tar.bz2 -cd $PRGNAM-$VERSION-Source -chown -R root:root . -find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ - -o -perm 511 \) -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; - -patch -p1 < $CWD/trilinos-12.4.2_lapack-3.6.0.patch - -# Use CUDA SDK and CUSPARSE. -if [ "${CUDA:-no}" == "yes" ]; then - OPT_DEPS="$OPT_DEPS -DTPL_ENABLE_CUDA -DTPL_ENABLE_CUSPARSE" -fi - -if [ "${EXAMPLES:-yes}" == "no" ]; then - OPT_DEPS="$OPT_DEPS -DTrilinos_ENABLE_EXAMPLES=OFF" -fi - - CFGSERIAL="-DCMAKE_C_COMPILER=/usr/bin/gcc \ - -DCMAKE_CXX_COMPILER=/usr/bin/g++ \ - -DCMAKE_Fortran_COMPILER=/usr/bin/gfortran \ - -DCMAKE_MAKE_PROGRAM=make \ - -DTrilinos_ENABLE_NOX=ON \ - -DNOX_ENABLE_LOCA=ON \ - -DTrilinos_ENABLE_EpetraExt=ON \ - -DEpetraExt_BUILD_BTF=ON \ - -DEpetraExt_BUILD_EXPERIMENTAL=ON \ - -DEpetraExt_BUILD_GRAPH_REORDERINGS=ON \ - -DTrilinos_ENABLE_TrilinosCouplings=ON \ - -DTrilinos_ENABLE_Ifpack=ON \ - -DTrilinos_ENABLE_Isorropia=ON \ - -DTrilinos_ENABLE_AztecOO=ON \ - -DTrilinos_ENABLE_Belos=ON \ - -DTrilinos_ENABLE_Teuchos=ON \ - -DTeuchos_ENABLE_COMPLEX=ON \ - -DTrilinos_ENABLE_Amesos=ON \ - -DAmesos_ENABLE_KLU=ON \ - -DAmesos_ENABLE_UMFPACK=ON \ - -DTrilinos_ENABLE_Sacado=ON \ - -DTrilinos_ENABLE_Kokkos=OFF \ - -DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES=OFF \ - -DTPL_ENABLE_AMD=ON \ - -DAMD_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \ - -DTPL_AMD_INCLUDE_DIRS=/usr/include/suitesparce \ - -DTPL_ENABLE_UMFPACK=ON \ - -DUMFPACK_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \ - -DTPL_UMFPACK_INCLUDE_DIRS=/usr/include/suitesparse \ - -DTPL_ENABLE_BLAS=ON \ - -DTPL_ENABLE_LAPACK=ON " - - CFGPARALLEL="-DCMAKE_C_COMPILER=/usr/bin/mpicc \ - -DCMAKE_CXX_COMPILER=/usr/bin/mpic++ \ - -DCMAKE_Fortran_COMPILER=/usr/bin/mpif77 \ - -DCMAKE_MAKE_PROGRAM=make \ - -DTrilinos_ENABLE_NOX=ON \ - -DNOX_ENABLE_LOCA=ON \ - -DTrilinos_ENABLE_EpetraExt=ON \ - -DEpetraExt_BUILD_BTF=ON \ - -DEpetraExt_BUILD_EXPERIMENTAL=ON \ - -DEpetraExt_BUILD_GRAPH_REORDERINGS=ON \ - -DTrilinos_ENABLE_TrilinosCouplings=ON \ - -DTrilinos_ENABLE_Ifpack=ON \ - -DTrilinos_ENABLE_ShyLU=ON \ - -DTrilinos_ENABLE_Isorropia=ON \ - -DTrilinos_ENABLE_AztecOO=ON \ - -DTrilinos_ENABLE_Belos=ON \ - -DTrilinos_ENABLE_Teuchos=ON \ - -DTeuchos_ENABLE_COMPLEX=ON \ - -DTrilinos_ENABLE_Amesos=ON \ - -DAmesos_ENABLE_KLU=ON \ - -DAmesos_ENABLE_UMFPACK=ON \ - -DTrilinos_ENABLE_Sacado=ON \ - -DTrilinos_ENABLE_Kokkos=OFF \ - -DTrilinos_ENABLE_Zoltan=ON \ - -DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES=OFF \ - -DTPL_ENABLE_AMD=ON \ - -DAMD_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \ - -DTPL_AMD_INCLUDE_DIRS=/usr/include/suitesparse \ - -DTPL_ENABLE_UMFPACK=ON \ - -DUMFPACK_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \ - -DTPL_UMFPACK_INCLUDE_DIRS=/usr/include/suitesparse \ - -DTPL_ENABLE_BLAS=ON \ - -DTPL_ENABLE_LAPACK=ON \ - -DTPL_ENABLE_ParMETIS=ON \ - -DParMETIS_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \ - -DTPL_ParMETIS_INCLUDE_DIRS=/usr/include/parmetis \ - -DTPL_ENABLE_MPI=ON " - - CFGTRILINOS=$CFGSERIAL - BUILDDIR=build-serial - -if [ "${PARALLEL:-no}" == "yes" ]; then - CFGTRILINOS=$CFGPARALLEL - BUILDDIR=build-parallel - SLKCFLAGS="CC=mpicc CXX=mpic++ F77=mpif77 $SLKCFLAGS" -fi - - mkdir -p $BUILDDIR - cd $BUILDDIR - - cmake \ - -DCMAKE_C_FLAGS:STRING="$SLKCFLAGS" \ - -DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \ - -DCMAKE_Fortran_FLAGS:STRING="$SLKCFLAGS" \ - -DCMAKE_INSTALL_PREFIX=/usr \ - -DTrilinos_INSTALL_LIB_DIR=/usr/lib${LIBDIRSUFFIX} \ - -DTrilinos_INSTALL_INCLUDE_DIR=/usr/include \ - $CFGTRILINOS \ - $OPT_DEPS \ - -DBUILD_SHARED_LIBS=ON \ - -DCMAKE_BUILD_TYPE=RELEASE .. - - for f in $(grep -r -l /usr//usr/lib .); do - sed -i -e 's:/usr//usr/lib:/usr/lib:g' $f - done - - make - ctest - make install DESTDIR=$PKG -cd .. - -find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ - | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true - -find $PKG -name perllocal.pod -o -name ".packlist" -o -name "*.bs" | xargs rm -f || true - -mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a LICENSE $PKG/usr/doc/$PRGNAM-$VERSION -cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild - -mkdir -p $PKG/install -cat $CWD/slack-desc > $PKG/install/slack-desc - -cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE diff --git a/libraries/trilinos/trilinos.info b/libraries/trilinos/trilinos.info deleted file mode 100644 index f422a300c3..0000000000 --- a/libraries/trilinos/trilinos.info +++ /dev/null @@ -1,10 +0,0 @@ -PRGNAM="trilinos" -VERSION="12.6.3" -HOMEPAGE="https://github.com/trilinos/Trilinos" -DOWNLOAD="https://ponce.cc/slackware/sources/repo/trilinos-12.6.3-Source.tar.bz2" -MD5SUM="d94e31193559b334fd41d05eb22f9285" -DOWNLOAD_x86_64="" -MD5SUM_x86_64="" -REQUIRES="lapack blas suitesparse" -MAINTAINER="Guilherme Calandrini" -EMAIL="g_calandrini[at]hotmail[dot]es" -- cgit v1.2.3