From 2b3ebf402315496abda7d4fddcd659cad301ca8e Mon Sep 17 00:00:00 2001 From: Lorenzo Trevisan Date: Sat, 23 Sep 2017 16:12:38 +0100 Subject: academic/dakota: Added (optimization toolkit). Signed-off-by: David Spencer --- academic/dakota/README | 12 +++++ academic/dakota/dakota.SlackBuild | 97 +++++++++++++++++++++++++++++++++++++++ academic/dakota/dakota.csh | 6 +++ academic/dakota/dakota.info | 10 ++++ academic/dakota/dakota.sh | 6 +++ academic/dakota/doinst.sh | 26 +++++++++++ academic/dakota/slack-desc | 19 ++++++++ 7 files changed, 176 insertions(+) create mode 100644 academic/dakota/README create mode 100644 academic/dakota/dakota.SlackBuild create mode 100644 academic/dakota/dakota.csh create mode 100644 academic/dakota/dakota.info create mode 100644 academic/dakota/dakota.sh create mode 100644 academic/dakota/doinst.sh create mode 100644 academic/dakota/slack-desc (limited to 'academic/dakota') diff --git a/academic/dakota/README b/academic/dakota/README new file mode 100644 index 0000000000..01d05fcdec --- /dev/null +++ b/academic/dakota/README @@ -0,0 +1,12 @@ +The Dakota toolkit provides a flexible, extensible interface between +analysis codes and iteration methods. Dakota contains algorithms for +optimization with gradient and nongradient-based methods; uncertainty +quantification with sampling, reliability, stochastic expansion, and +epistemic methods; parameter estimation with nonlinear least squares +methods; and sensitivity/variance analysis with design of experiments +and parameter study capabilities. These capabilities may be used on +their own or as components within advanced strategies such as +surrogate-based optimization, mixed integer nonlinear programming, or +optimization under uncertainty. + +Optional dependency: openmpi diff --git a/academic/dakota/dakota.SlackBuild b/academic/dakota/dakota.SlackBuild new file mode 100644 index 0000000000..72c600607a --- /dev/null +++ b/academic/dakota/dakota.SlackBuild @@ -0,0 +1,97 @@ +#!/bin/sh + +# Slackware build script for Dakota + +# Copyright 2017 Lorenzo Trevisan, Caorle, Venice, Italy +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=dakota +VERSION=${VERSION:-6.6} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +if [ -z "$ARCH" ]; then + case "$( uname -m )" in + i?86) ARCH=i586 ;; + arm*) ARCH=arm ;; + *) ARCH=$( uname -m ) ;; + esac +fi + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION-release-public.src-UI +tar xvf $CWD/$PRGNAM-$VERSION-public.src-UI.tar.gz +cd $PRGNAM-$VERSION-release-public.src-UI +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +mkdir -p build +cd build + cmake \ + -DCMAKE_C_FLAGS:STRING="$SLKCFLAGS" \ + -DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \ + -DCMAKE_INSTALL_PREFIX=/opt/$PRGNAM \ + -DCMAKE_BUILD_TYPE=Release .. + make + make install DESTDIR=$PKG +cd .. + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +install -D -m755 $CWD/$PRGNAM.sh $PKG/etc/profile.d/$PRGNAM.sh.new +install -D -m755 $CWD/$PRGNAM.csh $PKG/etc/profile.d/$PRGNAM.csh.new + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a COPYRIGHT LICENSE INSTALL README $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/dakota/dakota.csh b/academic/dakota/dakota.csh new file mode 100644 index 0000000000..4cd591feae --- /dev/null +++ b/academic/dakota/dakota.csh @@ -0,0 +1,6 @@ +set path=( $path /opt/dakota/bin:/opt/dakota/test ) +if ( $?LD_LIBRARY_PATH ) then + setenv LD_LIBRARY_PATH "$LD_LIBRARY_PATH:/opt/dakota/lib:/opt/dakota/bin" +else + setenv LD_LIBRARY_PATH "/opt/dakota/lib:/opt/dakota/bin" +endif diff --git a/academic/dakota/dakota.info b/academic/dakota/dakota.info new file mode 100644 index 0000000000..8e4d22d1bf --- /dev/null +++ b/academic/dakota/dakota.info @@ -0,0 +1,10 @@ +PRGNAM="dakota" +VERSION="6.6" +HOMEPAGE="http://dakota.sandia.gov/" +DOWNLOAD="http://dakota.sandia.gov/sites/default/files/distributions/public/dakota-6.6-public.src-UI.tar.gz" +MD5SUM="a048041bdc5bcc5a76c1cc1b912cfd02" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="blas lapack" +MAINTAINER="Lorenzo Trevisan" +EMAIL="lorenzo.trevisan@gmail.com" diff --git a/academic/dakota/dakota.sh b/academic/dakota/dakota.sh new file mode 100644 index 0000000000..4db0d6eae1 --- /dev/null +++ b/academic/dakota/dakota.sh @@ -0,0 +1,6 @@ +export PATH=$PATH:/opt/dakota/bin:/opt/dakota/test +if [ -z "$LD_LIBRARY_PATH" ]; then + export LD_LIBRARY_PATH="/opt/dakota/lib:/opt/dakota/bin" +else + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/dakota/lib:/opt/dakota/bin" +fi diff --git a/academic/dakota/doinst.sh b/academic/dakota/doinst.sh new file mode 100644 index 0000000000..30268b5327 --- /dev/null +++ b/academic/dakota/doinst.sh @@ -0,0 +1,26 @@ +config() { + NEW="$1" + OLD="$(dirname $NEW)/$(basename $NEW .new)" + # If there's no config file by that name, mv it over: + if [ ! -r $OLD ]; then + mv $NEW $OLD + elif [ "$(cat $OLD | md5sum)" = "$(cat $NEW | md5sum)" ]; then + # toss the redundant copy + rm $NEW + fi + # Otherwise, we leave the .new copy for the admin to consider... +} + +preserve_perms() { + NEW="$1" + OLD="$(dirname $NEW)/$(basename $NEW .new)" + if [ -e $OLD ]; then + cp -a $OLD ${NEW}.incoming + cat $NEW > ${NEW}.incoming + mv ${NEW}.incoming $NEW + fi + config $NEW +} + +preserve_perms etc/profile.d/dakota.sh.new +preserve_perms etc/profile.d/dakota.csh.new diff --git a/academic/dakota/slack-desc b/academic/dakota/slack-desc new file mode 100644 index 0000000000..abe39ffa3f --- /dev/null +++ b/academic/dakota/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +dakota: dakota (optimization toolkit) +dakota: +dakota: Dakota contains algorithms for optimization with gradient and +dakota: nongradient-based methods; uncertainty quantification with sampling, +dakota: reliability, stochastic expansion, and epistemic methods; parameter +dakota: estimation with nonlinear least squares methods; and sensitivity and +dakota: variance analysis with design of experiments and parameter study +dakota: capabilities. +dakota: +dakota: +dakota: -- cgit v1.2.3