From e529dcb62eff1c6bd8cf48a1dc7a23f972ce6e4f Mon Sep 17 00:00:00 2001 From: Petar Petrov Date: Mon, 28 Nov 2011 22:17:29 -0600 Subject: misc/bodr: Added (Blue Obelisk Data Repository) Signed-off-by: Robby Workman --- misc/bodr/README | 19 ++++++++++ misc/bodr/bodr.SlackBuild | 91 +++++++++++++++++++++++++++++++++++++++++++++++ misc/bodr/bodr.info | 10 ++++++ misc/bodr/slack-desc | 19 ++++++++++ 4 files changed, 139 insertions(+) create mode 100644 misc/bodr/README create mode 100644 misc/bodr/bodr.SlackBuild create mode 100644 misc/bodr/bodr.info create mode 100644 misc/bodr/slack-desc diff --git a/misc/bodr/README b/misc/bodr/README new file mode 100644 index 0000000000..5b2994c5fe --- /dev/null +++ b/misc/bodr/README @@ -0,0 +1,19 @@ +BODR is the "Blue Obelisk Data Repository". + +It represents a set of common, standardized data for chemoinformatics +in both XML and plain-text formats. Currently this encompasses: + +1) Elements directory + - element names and symbols + - atomic masses, covalent radii, van der Waals radii + - Pauling electronegativities + - electron affinity + - ionization potential + - default element colors for viewers +2) Isotopes directory + - exact masses of most abundant isotopes + - isotopic masses and abundances + - spin + - kinds of decay, percentages and energy + - magnetic dipole moment + - halflife diff --git a/misc/bodr/bodr.SlackBuild b/misc/bodr/bodr.SlackBuild new file mode 100644 index 0000000000..db9c45ef0d --- /dev/null +++ b/misc/bodr/bodr.SlackBuild @@ -0,0 +1,91 @@ +#!/bin/sh + +# Slackware build script for bodr + +# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=bodr +VERSION=${VERSION:-9} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +ARCH=noarch + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +if [ "$ARCH" = "i486" ]; then + SLKCFLAGS="-O2 -march=i486 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +tar xvf $CWD/$PRGNAM-$VERSION.tar.gz +cd $PRGNAM-$VERSION +chown -R root:root . +find . \ + \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \ + -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ + -exec chmod 644 {} \; + +CFLAGS="$SLKCFLAGS" \ +CXXFLAGS="$SLKCFLAGS" \ +./configure \ + --prefix=/usr \ + --sysconfdir=/etc \ + --localstatedir=/var \ + --mandir=/usr/man \ + --docdir=/usr/doc/$PRGNAM-$VERSION + +make +make DESTDIR=$PKG install + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a \ + AUTHORS ChangeLog COPYING INSTALL NEWS README THANKS TODO \ + $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/misc/bodr/bodr.info b/misc/bodr/bodr.info new file mode 100644 index 0000000000..8ee08807f0 --- /dev/null +++ b/misc/bodr/bodr.info @@ -0,0 +1,10 @@ +PRGNAM="bodr" +VERSION="9" +HOMEPAGE="http://sourceforge.net/projects/bodr/" +DOWNLOAD="http://sourceforge.net/projects/bodr/files/bodr/9/bodr-9.tar.gz" +MD5SUM="eb69a3b1676f66757f707ffdc84d95a2" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +MAINTAINER="Petar Petrov" +EMAIL="ppetrov@paju.oulu.fi" +APPROVED="rworkman" diff --git a/misc/bodr/slack-desc b/misc/bodr/slack-desc new file mode 100644 index 0000000000..e4267d5940 --- /dev/null +++ b/misc/bodr/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. Line +# up the first '|' above the ':' following the base package name, and the '|' +# on the right side marks the last column you can put a character in. You must +# make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +bodr: bodr (Blue Obelisk Data Repository) +bodr: +bodr: BODR represents a set of common, standardized data for +bodr: chemoinformatics in both XML and plain-text formats. +bodr: +bodr: +bodr: +bodr: +bodr: +bodr: +bodr: \ No newline at end of file -- cgit v1.2.3