diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/staden/README | 4 | ||||
| -rwxr-xr-x[-rw-r--r--] | academic/staden/staden.SlackBuild | 12 | ||||
| -rw-r--r-- | academic/staden/staden.info | 8 |
3 files changed, 15 insertions, 9 deletions
diff --git a/academic/staden/README b/academic/staden/README index 1dcc9f0dca..09f23ced67 100644 --- a/academic/staden/README +++ b/academic/staden/README @@ -1,5 +1,5 @@ -The programs part of the Staden package provide a fully developed set -of DNA sequence assembly, editing, analysis and more. +The programs part of the Staden package provide an excellent and fully +developed set of DNA sequence assembly, editing, analysis and more. Some of its features include: GAP4 - Performs assembly, contig joining, assembly checking, repeat diff --git a/academic/staden/staden.SlackBuild b/academic/staden/staden.SlackBuild index 707e9007de..17f236fdb6 100644..100755 --- a/academic/staden/staden.SlackBuild +++ b/academic/staden/staden.SlackBuild @@ -24,7 +24,7 @@ PRGNAM=staden VERSION=${VERSION:-2.0.0b9} -BUILD=${BUILD:-2} +BUILD=${BUILD:-3} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then @@ -35,8 +35,8 @@ if [ -z "$ARCH" ]; then esac fi -SLKTCL=tcl8.5.9 # Slackware 13.37 sources for TCL -SLKTK=tk8.5.9 # Slackware 13.37 sources for TK +SLKTCL=tcl8.5.11 # Slackware 14.0 sources for TCL +SLKTK=tk8.5.11 # Slackware 14.0 sources for TK TKLIB=tklib0.5 # Folder name of TKLIB CWD=$(pwd) @@ -86,6 +86,7 @@ find $PRGNAM-$VERSION-src ${PRGNAM}_doc-$VERSION-src \ -exec chmod 644 {} \; cd $PRGNAM-$VERSION-src + # On Slackware64, the components of staden (like GAP4, GAP5, PREGAP4, # SPIN, TREV) will not run, as they still expect their libraries to be # in /usr/lib not /usr/lib64. Let's correct the libraries path. @@ -103,6 +104,11 @@ sed -i "73 a EMBOSS_DATA=/usr/share/EMBOSS/data; export EMBOSS_DATA" spin/spin # Correct the path where staden components look for their manual. sed -i "s:/share/doc/staden/manual:/doc/$PRGNAM-$VERSION/manual:" tk_utils/help_config +# These fixes are from Arch linux AUR +# http://aur.archlinux.org/packages/st/staden/PKGBUILD +sed -i 's:-DSVN_VERSION=$(SVNVERS)::' system.mk.in +sed -i "s/gzFile\ \*gz/gzFile\ gz/" gap5/zfio.h + CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ ./configure \ diff --git a/academic/staden/staden.info b/academic/staden/staden.info index 8c80e9c884..b4475719a9 100644 --- a/academic/staden/staden.info +++ b/academic/staden/staden.info @@ -3,12 +3,12 @@ VERSION="2.0.0b9" HOMEPAGE="http://staden.sourceforge.net/" DOWNLOAD="http://sourceforge.net/projects/staden/files/staden/2.0.0b9/staden-2.0.0b9-src.tar.gz \ http://sourceforge.net/projects/staden/files/staden/2.0.0b9/staden_doc-2.0.0b9-src.tar.gz \ - http://slackware.osuosl.org/slackware-13.37/source/tcl/tcl/tcl8.5.9-src.tar.xz \ - http://slackware.osuosl.org/slackware-13.37/source/tcl/tk/tk8.5.9-src.tar.xz" + http://slackware.osuosl.org/slackware-14.0/source/tcl/tcl/tcl8.5.11-src.tar.xz \ + http://slackware.osuosl.org/slackware-14.0/source/tcl/tk/tk8.5.11-src.tar.xz" MD5SUM="94dc304b00d18b95f783136c9ffd934f \ 730b433d8344624925b662ec37ac0804 \ - c1e4eea4afdd9a8f8888d5b7c481122d \ - 78b59df55904095af40d64a0cd08c50d" + 304a8ecc61d5db9e41f3653161997712 \ + fd5a5fabaf946568b4bb8d5213b7a92c" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="io_lib tklib" |