diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/perlprimer/README | 4 | ||||
| -rw-r--r-- | academic/perlprimer/perlprimer.SlackBuild | 39 | ||||
| -rw-r--r-- | academic/perlprimer/perlprimer.info | 8 | ||||
| -rw-r--r-- | academic/perlprimer/slack-desc | 4 |
4 files changed, 38 insertions, 17 deletions
diff --git a/academic/perlprimer/README b/academic/perlprimer/README index 12917e35e9..aa0b0f5004 100644 --- a/academic/perlprimer/README +++ b/academic/perlprimer/README @@ -22,5 +22,5 @@ Marshall OJ. PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR. Bioinformatics 2004 20(15):2471-2472 -This requires perl-tk and libwww-perl. -For Real Time PCR, spidey is required. +This requires perl-tk and libwww-perl. For Real Time PCR, spidey is +required. diff --git a/academic/perlprimer/perlprimer.SlackBuild b/academic/perlprimer/perlprimer.SlackBuild index 87be393b78..7afa41f793 100644 --- a/academic/perlprimer/perlprimer.SlackBuild +++ b/academic/perlprimer/perlprimer.SlackBuild @@ -1,19 +1,34 @@ #!/bin/sh # Slackware build script for perlprimer -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=perlprimer -VERSION=${VERSION:-1.1.20} -ARCH=noarch +VERSION=${VERSION:-1.1.21} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +ARCH=noarch + CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM @@ -25,12 +40,18 @@ rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $PRGNAM-$VERSION -tar -jxvf $CWD/$PRGNAM-$VERSION.tar.bz2 +tar xvf $CWD/$PRGNAM-$VERSION.tar.bz2 cd $PRGNAM-$VERSION +chown -R root:root . +find . \ + \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \ + -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ + -exec chmod 644 {} \; install -D -m755 perlprimer.pl $PKG/usr/bin/perlprimer.pl +install -D -m644 gcg.603 $PKG/usr/share/$PRGNAM/gcg.603 -# Menu item and icon mkdir -p $PKG/usr/share/{applications,pixmaps} cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications/ cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps diff --git a/academic/perlprimer/perlprimer.info b/academic/perlprimer/perlprimer.info index ad7c5f7d12..e6f382387f 100644 --- a/academic/perlprimer/perlprimer.info +++ b/academic/perlprimer/perlprimer.info @@ -1,10 +1,10 @@ PRGNAM="perlprimer" -VERSION="1.1.20" +VERSION="1.1.21" HOMEPAGE="http://perlprimer.sourceforge.net/" -DOWNLOAD="http://downloads.sourceforge.net/perlprimer/perlprimer-1.1.20.tar.bz2" -MD5SUM="e3ce015cd5301aeb6120b75692008431" +DOWNLOAD="http://downloads.sourceforge.net/perlprimer/perlprimer-1.1.21.tar.bz2" +MD5SUM="016eb870b988a280cdb730a86dd67591" DOWNLOAD_x86_64="" MD5SUM_x86_64="" MAINTAINER="Petar Petrov" EMAIL="ppetrov@paju.oulu.fi" -APPROVED="Niels Horn" +APPROVED="rworkman" diff --git a/academic/perlprimer/slack-desc b/academic/perlprimer/slack-desc index 8e0df5af07..580e83068c 100644 --- a/academic/perlprimer/slack-desc +++ b/academic/perlprimer/slack-desc @@ -13,7 +13,7 @@ perlprimer: that designs primers for standard PCR, bisulphite PCR, real-time PCR perlprimer: (QPCR) and sequencing. It aims to automate and simplify the process perlprimer: of primer design. perlprimer: -perlprimer: -perlprimer: perlprimer: References: /usr/doc/perlprimer-$VERSION/References perlprimer: Home: http://perlprimer.sourceforge.net/ +perlprimer: +perlprimer: |