diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/bedtools/README | 2 | ||||
| -rw-r--r-- | academic/bedtools/bedtools.SlackBuild | 6 | ||||
| -rw-r--r-- | academic/bedtools/bedtools.info | 6 |
3 files changed, 7 insertions, 7 deletions
diff --git a/academic/bedtools/README b/academic/bedtools/README index d9e5aa3fd4..94430184da 100644 --- a/academic/bedtools/README +++ b/academic/bedtools/README @@ -3,7 +3,7 @@ for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used -genomic file formats such as BAM, BED, GFF/GTF, VCF. +genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can diff --git a/academic/bedtools/bedtools.SlackBuild b/academic/bedtools/bedtools.SlackBuild index 6182865d5f..d215030da4 100644 --- a/academic/bedtools/bedtools.SlackBuild +++ b/academic/bedtools/bedtools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for bedtools -# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2014-2018 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -24,7 +24,7 @@ PRGNAM=bedtools DIRNAM=bedtools2 -VERSION=${VERSION:-2.26.0} +VERSION=${VERSION:-2.27.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -73,7 +73,7 @@ find -L . \ # Use our CFLAGS sed -i "/CXXFLAGS/s/=/+=/" Makefile -CXXFLAGS="$SLKCFLAGS" \ +CXXFLAGS="$SLKCFLAGS -std=c++11" \ make # Install the binary and scripts diff --git a/academic/bedtools/bedtools.info b/academic/bedtools/bedtools.info index bf5f8dcc42..37153c5c89 100644 --- a/academic/bedtools/bedtools.info +++ b/academic/bedtools/bedtools.info @@ -1,8 +1,8 @@ PRGNAM="bedtools" -VERSION="2.26.0" +VERSION="2.27.1" HOMEPAGE="http://bedtools.readthedocs.org/" -DOWNLOAD="https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz" -MD5SUM="036b7b9b54aac498f14017ea5c1a5857" +DOWNLOAD="https://github.com/arq5x/bedtools2/releases/download/v2.27.1/bedtools-2.27.1.tar.gz" +MD5SUM="ec87cf43735e15c69f13183c6aae00a6" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |