diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/EMBASSY/EMBASSY.SlackBuild | 14 | ||||
| -rw-r--r-- | academic/EMBASSY/EMBASSY.info | 76 |
2 files changed, 45 insertions, 45 deletions
diff --git a/academic/EMBASSY/EMBASSY.SlackBuild b/academic/EMBASSY/EMBASSY.SlackBuild index 48efb18e7e..a5fd088e4d 100644 --- a/academic/EMBASSY/EMBASSY.SlackBuild +++ b/academic/EMBASSY/EMBASSY.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for EMBASSY -# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE PRGNAM=EMBASSY -VERSION=${VERSION:-6.5.7} # Keep this the same version as EMBOSS +VERSION=${VERSION:-6.6.0} # Keep this the same version as EMBOSS BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -56,7 +56,7 @@ fi # EMBASSY components and their versions CBSTOOLS=CBSTOOLS-1.0.0.650 -CLUSTALOMEGA=CLUSTALOMEGA-0.2.0.650 +CLUSTALOMEGA=CLUSTALOMEGA-1.1.0 DOMAINATRIX=DOMAINATRIX-0.1.650 DOMALIGN=DOMALIGN-0.1.650 DOMSEARCH=DOMSEARCH-0.1.650 @@ -105,10 +105,10 @@ tar xvf $CWD/$VIENNA.tar.gz chown -R root:root . find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ - -exec chmod 644 {} \; + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; # Build CBSTOOLS cd $TMP/$PRGNAM-$VERSION/$CBSTOOLS diff --git a/academic/EMBASSY/EMBASSY.info b/academic/EMBASSY/EMBASSY.info index 0f39b438ba..f4456f4d50 100644 --- a/academic/EMBASSY/EMBASSY.info +++ b/academic/EMBASSY/EMBASSY.info @@ -1,44 +1,44 @@ PRGNAM="EMBASSY" -VERSION="6.5.7" +VERSION="6.6.0" HOMEPAGE="http://emboss.sourceforge.net/embassy/" -DOWNLOAD="ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/CBSTOOLS-1.0.0.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/CLUSTALOMEGA-0.2.0.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMAINATRIX-0.1.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMALIGN-0.1.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMSEARCH-0.1.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/EMNU-1.05.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/ESIM4-1.0.0.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/HMMER-2.3.2.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/IPRSCAN-4.3.1.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MEME-4.7.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MSE-3.0.0.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MYEMBOSS-6.5.1.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MYEMBOSSDEMO-6.5.0.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/PHYLIPNEW-3.69.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/SIGNATURE-0.1.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/STRUCTURE-0.1.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/TOPO-2.0.650.tar.gz \ - ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/VIENNA-1.7.2.650.tar.gz" -MD5SUM="4913776ee5ff93ae839762107f8d8bc8 \ -f24967741eb2fe9c3bccd6458276e127 \ -d7539f6ee6f25bb401ffad2802441010 \ -079a6371390201fa39f19c25cce8d5ba \ -5fd0e943f4db9f9ea008eabd68dc60e7 \ -6e0b7ac797554c52f413d23e5781e71b \ -2ca9069bf9c87697bf52c77b25a659d7 \ -d82017cc68ce3d381e8cc6dcfd68f39e \ -81720978302afc8d855b316651be5b2a \ -4d2dac5a2d66ad43552271be81c1cd1b \ -3b26ecbdf8032680f1de148f5d91d776 \ -54e9ca4dadd0b988f8964f886c6f026c \ -f3cb3421a79e7e6466686628de346b20 \ -488d117d32a391a9b53c60260595e67b \ -361773a6f1b0b862f5cbf3d4d3ee1fa0 \ -40afa99f995f34275005b76f8b05c337 \ -5a0b0c478cece42cc564599b91f9c1cf \ -633c16e28818b0dc4d3ae084a7beae56" +DOWNLOAD="ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/MYEMBOSS-6.5.1.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/MYEMBOSSDEMO-6.5.0.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.650.tar.gz \ + ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.650.tar.gz" +MD5SUM="237577573d9cbe5df18bac8dae17240b \ +e4243a86c6127d99b1d501a54a7fbbf3 \ +5cbc136ded7826a0066e51074738a5a1 \ +d74e58418bf1a4de29c1f945830e9e8a \ +f01cea0480c0e9abbd07196084a64451 \ +e66d6083191ac1cc804ea80e494005ee \ +b4b0f551f5c3901228e77475aa95e856 \ +4871d5c8bb0f3cc37f5f34b3126ab171 \ +3330f1ee2f4f4237fc40ac6b4b6f8099 \ +b2ce9b52ec0540bd56634045664ea2ce \ +b79a17a2ad25fe6ffc8d23c7bbf8bc0b \ +3b8096d4f5869c6856c60f53fa5f5131 \ +d1468bcd15d48374d0d59e14e4c4a6b5 \ +b7da94cc7c0f1f6791cd4312a64c225a \ +344da0793ab3a85a68b52b3bdf49929a \ +fa89b9b0cab3c7fe5b86a56de2a94686 \ +9a32d2263a6c67927ab1c237890cc222 \ +49c748441e0e3fd9b86429be3db1d025" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="EMBOSS" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="petar.petrov@student.oulu.fi" |