diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/amplicon/References | 2 | ||||
| -rw-r--r-- | academic/amplicon/amplicon.SlackBuild | 42 | ||||
| -rw-r--r-- | academic/amplicon/amplicon.info | 8 | ||||
| -rw-r--r-- | academic/amplicon/slack-desc | 2 |
4 files changed, 35 insertions, 19 deletions
diff --git a/academic/amplicon/References b/academic/amplicon/References index cef68629d6..8b07c21822 100644 --- a/academic/amplicon/References +++ b/academic/amplicon/References @@ -1,5 +1,3 @@ -References - Jarman SN (2004) Amplicon: software for designing PCR primers on aligned DNA sequences. Bioinformatics 20: 1644-1645. diff --git a/academic/amplicon/amplicon.SlackBuild b/academic/amplicon/amplicon.SlackBuild index 715746b531..24ebdf4da9 100644 --- a/academic/amplicon/amplicon.SlackBuild +++ b/academic/amplicon/amplicon.SlackBuild @@ -1,19 +1,34 @@ #!/bin/sh # Slackware build script for amplicon -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=amplicon VERSION=${VERSION:-b09.1} -ARCH=noarch -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} +ARCH=noarch + CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM @@ -27,19 +42,20 @@ cd $TMP rm -rf $PRGNAM-$VERSION mkdir $PRGNAM-$VERSION cd $PRGNAM-$VERSION -gunzip -c $CWD/Amplicon-Linux-$VERSION.py.gz > amplicon.py +gunzip -c $CWD/Amplicon-Linux-$VERSION.py.gz > $PRGNAM.py +unzip $CWD/AmpliconManualb06.zip # Fix the window size -sed "s:root.maxsize(965,570):root.maxsize(1400,800):" -i amplicon.py +sed "s:root.maxsize(965,570):root.maxsize(1400,800):" -i $PRGNAM.py -install -D -m755 amplicon.py $PKG/usr/bin/amplicon.py +install -D -m755 $PRGNAM.py $PKG/usr/bin/$PRGNAM.py -# Manu item and icon mkdir -p $PKG/usr/share/{applications,pixmaps} -cp $CWD/amplicon.desktop $PKG/usr/share/applications/ -cp $CWD/amplicon.png $PKG/usr/share/pixmaps +cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications/ +cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a AmpliconManualVersion2.doc $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References diff --git a/academic/amplicon/amplicon.info b/academic/amplicon/amplicon.info index baf1232189..ff5ecfc895 100644 --- a/academic/amplicon/amplicon.info +++ b/academic/amplicon/amplicon.info @@ -1,10 +1,12 @@ PRGNAM="amplicon" VERSION="b09.1" HOMEPAGE="http://amplicon.sourceforge.net/" -DOWNLOAD="http://downloads.sourceforge.net/amplicon/Amplicon-Linux-b09.1.py.gz" -MD5SUM="43e6bedbe16b7f423a88286910f8749a" +DOWNLOAD="http://downloads.sourceforge.net/amplicon/Amplicon-Linux-b09.1.py.gz \ + http://sourceforge.net/projects/amplicon/files/amplicon/Amplicon_b08/AmpliconManualb06.zip" +MD5SUM="43e6bedbe16b7f423a88286910f8749a \ + 87d6f55a9adbbd85b50f8fd94fd3988b" DOWNLOAD_x86_64="" MD5SUM_x86_64="" MAINTAINER="Petar Petrov" EMAIL="ppetrov@paju.oulu.fi" -APPROVED="Niels Horn" +APPROVED="rworkman" diff --git a/academic/amplicon/slack-desc b/academic/amplicon/slack-desc index e3c789afa1..d86f88d8f7 100644 --- a/academic/amplicon/slack-desc +++ b/academic/amplicon/slack-desc @@ -14,6 +14,6 @@ amplicon: useful for designing 'group-specific' PCR primer sets that produce amplicon: amplicons from a targer group of species, but not from other groups amplicon: of species. amplicon: -amplicon: amplicon: References: /usr/doc/amplicon-$VERSION/References amplicon: Home: http://amplicon.sourceforge.net/ +amplicon: |