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Diffstat (limited to 'academic/ugene/README')
| -rw-r--r-- | academic/ugene/README | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/academic/ugene/README b/academic/ugene/README index 74e8a62736..a163595629 100644 --- a/academic/ugene/README +++ b/academic/ugene/README @@ -37,10 +37,14 @@ program. Almost all of them can be found at SlackBuilds.org: - clustalo (Clustal Omega) - clustalw (Multiple Sequence Alignment) - cufflinks (A reference-guided assembler for RNA-Seq experiments) +- cutadapt (Trim adapters from high-throughput sequencing reads) +- fastqc (A quality control tool for high throughput sequence data) - ncbi-blast (BLAST: Basic Local Alignment Search Tool) - ncbi-blast-plus (BLAST+ Command Line Applications) - PhyML (Phylogenetic estimation using Maximum Likelihood) - samtools (Sequence Alignment/Map Tools) +- snpEff (Genetic variant annotation and effect prediction toolbox) +- spades (SPAdes Genome Assembler) - spidey (mRNA-to-genomic alignment) - t_coffee (A multiple sequence alignment program) - tabix (Generic indexer for TAB-delimited genome position files ) |