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diff --git a/academic/seaview/README b/academic/seaview/README new file mode 100644 index 0000000000..8e1bd893b4 --- /dev/null +++ b/academic/seaview/README @@ -0,0 +1,30 @@ +SeaView is a multiplatform, graphical user interface for multiple +sequence alignment and molecular phylogeny. Important features are: + +1) SeaView reads and writes various file formats (NEXUS, MSF, + CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences + and of phylogenetic trees. + +2) SeaView drives programs muscle or clustalw for multiple sequence + alignment, and also allows to use any external alignment algorithm + able to read and write FASTA-formatted files. + +3) SeaView computes phylogenetic trees by + a) parsimony, using PHYLIP's dnapars/protpars algorithm, + b) distance, with NJ or BioNJ algorithms on a variety of + evolutionary distances, + c) maximum likelihood, driving program PhyML 3.0. + +4) SeaView draws phylogenetic trees on screen, PDF or PostScript files +5) SeaView allows to download sequences from EMBL/GenBank/UniProt + using the Internet. + +For details and citation: +Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a +multiplatform graphical user interface for sequence alignment and +phylogenetic tree building. Molecular Biology and Evolution +27(2):221-224. + +Seaview requires fltk as a build depencency, but you need clustalw, +PhyML and muscle, which SeaView drives. All of these are available at +SlackBuilds.org. |