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-rw-r--r--academic/seaview/README14
1 files changed, 8 insertions, 6 deletions
diff --git a/academic/seaview/README b/academic/seaview/README
index 8e1bd893b4..21de5ab1c5 100644
--- a/academic/seaview/README
+++ b/academic/seaview/README
@@ -9,14 +9,17 @@ sequence alignment and molecular phylogeny. Important features are:
alignment, and also allows to use any external alignment algorithm
able to read and write FASTA-formatted files.
-3) SeaView computes phylogenetic trees by
+3) Seaview drives the Gblocks program to select blocks of
+ evolutionarily conserved sites.
+
+4) SeaView computes phylogenetic trees by
a) parsimony, using PHYLIP's dnapars/protpars algorithm,
b) distance, with NJ or BioNJ algorithms on a variety of
evolutionary distances,
c) maximum likelihood, driving program PhyML 3.0.
-4) SeaView draws phylogenetic trees on screen, PDF or PostScript files
-5) SeaView allows to download sequences from EMBL/GenBank/UniProt
+5) SeaView draws phylogenetic trees on screen, PDF or PostScript files
+6) SeaView allows to download sequences from EMBL/GenBank/UniProt
using the Internet.
For details and citation:
@@ -25,6 +28,5 @@ multiplatform graphical user interface for sequence alignment and
phylogenetic tree building. Molecular Biology and Evolution
27(2):221-224.
-Seaview requires fltk as a build depencency, but you need clustalw,
-PhyML and muscle, which SeaView drives. All of these are available at
-SlackBuilds.org.
+This requires fltk as a build dependency, but you also need clustalw,
+Gblocks, PhyML, and muscle, all of which SeaView drives.