diff options
Diffstat (limited to 'academic/rbio')
| -rw-r--r-- | academic/rbio/README | 5 | ||||
| -rw-r--r-- | academic/rbio/autotoolize.diff | 246 | ||||
| -rw-r--r-- | academic/rbio/rbio.SlackBuild | 107 | ||||
| -rw-r--r-- | academic/rbio/rbio.info | 10 | ||||
| -rw-r--r-- | academic/rbio/slack-desc | 19 |
5 files changed, 387 insertions, 0 deletions
diff --git a/academic/rbio/README b/academic/rbio/README new file mode 100644 index 0000000000..c30b708df3 --- /dev/null +++ b/academic/rbio/README @@ -0,0 +1,5 @@ +RBio - MATLAB toolbox for reading/writing sparse matrices in the +Rutherford/Boeing format, and for reading/writing problems in the UF +Sparse Matrix Collection from/to a set of files in a directory. + +This package is part of SuiteSparse. diff --git a/academic/rbio/autotoolize.diff b/academic/rbio/autotoolize.diff new file mode 100644 index 0000000000..4c495922ee --- /dev/null +++ b/academic/rbio/autotoolize.diff @@ -0,0 +1,246 @@ +diff --git a/Demo/Makefile.am b/Demo/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Demo/Makefile.am +@@ -0,0 +1,22 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) ++LDADD = $(top_builddir)/Source/librbio.la $(SUITESPARSECONFIG_LIBS) ++ ++EXTRA_DIST = \ ++ RBdemo.out ++ ++# Disable the .out implicit pattern rule. Prevents GNU make from ++# adding bogus dependencies for the .out files listed above. ++%.out: % ++ ++check_PROGRAMS = \ ++ RBdemo ++ ++RBdemo_SOURCES = RBdemo.c ++ ++RB = \ ++ $(top_srcdir)/RBio/private/west0479.rua ++ ++check-local: $(check_PROGRAMS) $(RB) ++ ./RBdemo < $(top_srcdir)/RBio/private/west0479.rua ++ ++CLEANFILES = temp.rb +diff --git a/Include/Makefile.am b/Include/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Include/Makefile.am +@@ -0,0 +1 @@ ++pkginclude_HEADERS = RBio.h +diff --git a/Makefile.am b/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Makefile.am +@@ -0,0 +1,5 @@ ++SUBDIRS = Include Source RBio Demo Tcov ++EXTRA_DIST = README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt ++ ++pkgconfigdir = $(libdir)/pkgconfig ++pkgconfig_DATA = rbio.pc +diff --git a/RBio/Makefile.am b/RBio/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/RBio/Makefile.am +@@ -0,0 +1,3 @@ ++SUBDIRS = private ++dist_noinst_DATA = \ ++ mywest +diff --git a/RBio/private/Makefile.am b/RBio/private/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/RBio/private/Makefile.am +@@ -0,0 +1,7 @@ ++dist_noinst_DATA = \ ++ bcsstk01.rb \ ++ farm.rb \ ++ lap_25.pse \ ++ lap_25.rb \ ++ west0479.rb \ ++ west0479.rua +diff --git a/Source/Makefile.am b/Source/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Source/Makefile.am +@@ -0,0 +1,18 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) ++ ++RBIOSRC = \ ++ RBio.c ++ ++lib_LTLIBRARIES = librbio.la ++noinst_LTLIBRARIES = librbioi.la librbiol.la ++ ++librbioi_la_SOURCES = $(RBIOSRC) ++librbioi_la_LIBADD = $(SUITESPARSECONFIG_LIBS) ++librbioi_la_CPPFLAGS = $(AM_CPPFLAGS) -DINT ++ ++librbiol_la_SOURCES = $(RBIOSRC) ++librbiol_la_LIBADD = $(SUITESPARSECONFIG_LIBS) ++ ++librbio_la_SOURCES = ++librbio_la_LIBADD = librbioi.la librbiol.la ++librbio_la_LDFLAGS = -no-undefined -version-number 2:1:1 +diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Tcov/Makefile.am +@@ -0,0 +1,92 @@ ++AM_CC = gcc ++AM_CFLAGS = -O0 -g --coverage ++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) ++LDADD = $(SUITESPARSECONFIG_LIBS) ++ ++dist_noinst_DATA = \ ++ matrices/Tina_DisCog.tar.gz \ ++ matrices/dwg961a.tar.gz \ ++ matrices/m4.rb \ ++ matrices/m4b.rb \ ++ matrices/mhd1280a.tar.gz \ ++ matrices/mhd1280b.tar.gz \ ++ matrices/plskz362.tar.gz \ ++ matrices/qc324.tar.gz \ ++ matrices/s4.rb \ ++ matrices/west0067.tar.gz \ ++ mangled/1.rb \ ++ mangled/2.rb \ ++ mangled/3.rb \ ++ mangled/4.rb \ ++ mangled/5.rb \ ++ mangled/6.rb \ ++ mangled/7.rb \ ++ mangled/8.rb \ ++ mangled/9.rb \ ++ mangled/10.rb \ ++ mangled/11.rb \ ++ mangled/12.rb \ ++ mangled/13.rb \ ++ mangled/14.rb \ ++ mangled/15.rb ++ ++check_PROGRAMS = \ ++ RBdemo \ ++ RBtest ++ ++RBdemo_SOURCES = $(top_srcdir)/Source/RBio.c $(top_srcdir)/Demo/RBdemo.c ++RBtest_SOURCES = $(top_srcdir)/Source/RBio.c RBtest.c ++ ++TAR = tar -O -xvvzf ++ ++RB = \ ++ $(top_srcdir)/RBio/private/bcsstk01.rb \ ++ $(top_srcdir)/RBio/private/farm.rb \ ++ $(top_srcdir)/RBio/private/lap_25.pse \ ++ $(top_srcdir)/RBio/private/lap_25.rb \ ++ $(top_srcdir)/RBio/private/west0479.rb \ ++ $(top_srcdir)/RBio/private/west0479.rua \ ++ $(addprefix $(srcdir)/,$(dist_noinst_DATA)) ++ ++COV = \ ++ $(top_srcdir)/Source/RBio.c \ ++ $(top_srcdir)/Demo/RBdemo.c \ ++ $(srcdir)/RBtest.c ++ ++check-local: $(check_PROGRAMS) $(RB) $(COV) ++ -./RBdemo $(top_srcdir)/RBio/private/bcsstk01.rb ++ -./RBdemo $(top_srcdir)/RBio/private/farm.rb ++ -./RBdemo $(top_srcdir)/RBio/private/lap_25.pse ++ -./RBdemo $(top_srcdir)/RBio/private/lap_25.rb ++ -./RBdemo $(top_srcdir)/RBio/private/west0479.rb ++ -./RBdemo $(top_srcdir)/RBio/private/west0479.rua ++ -$(TAR) $(srcdir)/matrices/dwg961a.tar.gz dwg961a/dwg961a.rb | ./RBdemo ++ -$(TAR) $(srcdir)/matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb | ./RBdemo ++ -$(TAR) $(srcdir)/matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb | ./RBdemo ++ -$(TAR) $(srcdir)/matrices/qc324.tar.gz qc324/qc324.rb | ./RBdemo ++ -$(TAR) $(srcdir)/matrices/plskz362.tar.gz plskz362/plskz362.rb | ./RBdemo ++ -$(TAR) $(srcdir)/matrices/west0067.tar.gz west0067/west0067.rb | ./RBdemo ++ -$(TAR) $(srcdir)/matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo ++ -./RBdemo $(srcdir)/matrices/m4.rb ++ -./RBdemo $(srcdir)/matrices/s4.rb ++ -./RBdemo $(srcdir)/matrices/m4b.rb ++ -./RBdemo $(srcdir)/mangled/1.rb ++ -./RBdemo $(srcdir)/mangled/2.rb ++ -./RBdemo $(srcdir)/mangled/3.rb ++ -./RBdemo $(srcdir)/mangled/4.rb ++ -./RBdemo $(srcdir)/mangled/5.rb ++ -./RBdemo $(srcdir)/mangled/6.rb ++ -./RBdemo $(srcdir)/mangled/7.rb ++ -./RBdemo $(srcdir)/mangled/8.rb ++ -./RBdemo $(srcdir)/mangled/9.rb ++ -./RBdemo $(srcdir)/mangled/10.rb ++ -./RBdemo $(srcdir)/mangled/11.rb ++ -./RBdemo $(srcdir)/mangled/12.rb ++ -./RBdemo $(srcdir)/mangled/13.rb ++ -./RBdemo $(srcdir)/mangled/14.rb ++ -./RBdemo $(srcdir)/mangled/15.rb ++ -./RBtest ++ -gcov -o $(builddir) $(COV) > gcov.out ++ -grep -c "#####" RBio.c.gcov ++ ++CLEANFILES = gcov.out *.gcov *.gcda *.gcno temp*.rb +diff --git a/configure.ac b/configure.ac +new file mode 100644 +--- /dev/null ++++ b/configure.ac +@@ -0,0 +1,41 @@ ++# -*- Autoconf -*- ++# Process this file with autoconf to produce a configure script. ++ ++AC_PREREQ([2.69]) ++AC_INIT([RBio],[2.1.1],[DrTimothyAldenDavis@gmail.com],[rbio],[http://www.suitesparse.com/]) ++AC_CONFIG_SRCDIR([Source/RBio.c]) ++AC_CONFIG_HEADERS([config.h]) ++AM_INIT_AUTOMAKE([foreign]) ++LT_INIT ++ ++# Checks for programs. ++AC_PROG_INSTALL ++AC_PROG_CC ++ ++LIBS_SAVED=$LIBS ++ ++# Checks for libraries. ++PKG_PROG_PKG_CONFIG ++PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig], ++ [], ++ [AC_MSG_ERROR([cannot find suitesparseconfig])]) ++ ++# Checks for header files. ++AC_CHECK_HEADERS([stddef.h stdlib.h string.h]) ++ ++# Checks for typedefs, structures, and compiler characteristics. ++ ++# Checks for library functions. ++ ++LIBS=$LIBS_SAVED ++ ++AC_CONFIG_FILES([ ++ rbio.pc ++ Makefile ++ Demo/Makefile ++ Include/Makefile ++ RBio/Makefile ++ RBio/private/Makefile ++ Source/Makefile ++ Tcov/Makefile]) ++AC_OUTPUT +diff --git a/rbio.pc.in b/rbio.pc.in +new file mode 100644 +--- /dev/null ++++ b/rbio.pc.in +@@ -0,0 +1,12 @@ ++prefix=@prefix@ ++exec_prefix=@exec_prefix@ ++libdir=@libdir@ ++includedir=@includedir@ ++ ++Name: @PACKAGE_NAME@ ++Description: Toolbox for reading/writing sparse matrices in Rutherford/Boeing format ++Version: @PACKAGE_VERSION@ ++URL: @PACKAGE_URL@ ++Requires.private: suitesparseconfig ++Libs: -L${libdir} -lrbio ++Cflags: -I${includedir}/rbio diff --git a/academic/rbio/rbio.SlackBuild b/academic/rbio/rbio.SlackBuild new file mode 100644 index 0000000000..4403638e46 --- /dev/null +++ b/academic/rbio/rbio.SlackBuild @@ -0,0 +1,107 @@ +#!/bin/sh + +# Slackware build script for RBio + +# Copyright 2013 Kyle Guinn <elyk03@gmail.com>, USA +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=rbio +SRCNAM=RBio +VERSION=${VERSION:-2.1.1} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +if [ -z "$ARCH" ]; then + case "$(uname -m)" in + i?86) ARCH=i486 ;; + arm*) ARCH=arm ;; + *) ARCH=$(uname -m) ;; + esac +fi + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +DOCS="README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt" + +if [ "$ARCH" = "i486" ]; then + SLKCFLAGS="-O2 -march=i486 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +# Recommended by SuiteSparse +SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $SRCNAM +tar xvf $CWD/$SRCNAM-$VERSION.tar.gz +cd $SRCNAM +chown -R root:root . +find -L . \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +patch -p1 < $CWD/autotoolize.diff +autoreconf -vif + +CFLAGS="$SLKCFLAGS" \ +./configure \ + --prefix=/usr \ + --libdir=/usr/lib${LIBDIRSUFFIX} \ + --sysconfdir=/etc \ + --localstatedir=/var \ + --mandir=/usr/man \ + --infodir=/usr/info \ + --docdir=/usr/doc/$PRGNAM-$VERSION \ + --enable-shared \ + --disable-static \ + --disable-dependency-tracking \ + --build=$ARCH-slackware-linux + +make +make check +make install-strip DESTDIR=$PKG + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/rbio/rbio.info b/academic/rbio/rbio.info new file mode 100644 index 0000000000..f00a7e82bf --- /dev/null +++ b/academic/rbio/rbio.info @@ -0,0 +1,10 @@ +PRGNAM="rbio" +VERSION="2.1.1" +HOMEPAGE="https://www.cise.ufl.edu/research/sparse/RBio/" +DOWNLOAD="https://www.cise.ufl.edu/research/sparse/RBio/RBio-2.1.1.tar.gz" +MD5SUM="07495e73e29683a8b348811a34e0e396" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="suitesparseconfig" +MAINTAINER="Kyle Guinn" +EMAIL="elyk03@gmail.com" diff --git a/academic/rbio/slack-desc b/academic/rbio/slack-desc new file mode 100644 index 0000000000..20e9a950bb --- /dev/null +++ b/academic/rbio/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +rbio: RBio (sparse matrix I/O routines) +rbio: +rbio: RBio - MATLAB toolbox for reading/writing sparse matrices in the +rbio: Rutherford/Boeing format, and for reading/writing problems in the +rbio: UF Sparse Matrix Collection from/to a set of files in a directory. +rbio: +rbio: +rbio: +rbio: +rbio: +rbio: |