diff options
Diffstat (limited to 'academic/paml')
| -rw-r--r-- | academic/paml/paml.SlackBuild | 12 | ||||
| -rw-r--r-- | academic/paml/paml.info | 10 | ||||
| -rw-r--r-- | academic/paml/slack-desc | 2 |
3 files changed, 11 insertions, 13 deletions
diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild index 091a998776..743c7a9094 100644 --- a/academic/paml/paml.SlackBuild +++ b/academic/paml/paml.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for paml -# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2017 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=paml -VERSION=${VERSION:-4.9c} +VERSION=${VERSION:-4.9e} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -35,8 +35,6 @@ if [ -z "$ARCH" ]; then esac fi -MAINVER=4.9c - CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM @@ -61,9 +59,9 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf ${PRGNAM}${MAINVER} +rm -rf ${PRGNAM}${VERSION} tar xvf $CWD/${PRGNAM}${VERSION}.tgz -cd ${PRGNAM}${MAINVER} +cd ${PRGNAM}${VERSION} chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ @@ -124,7 +122,7 @@ cd .. cc -o multiruns $SLKCFLAGS multiruns.c -lm install -D -m755 multiruns $PKG/usr/libexec/$PRGNAM/multiruns -cd $TMP/${PRGNAM}${MAINVER} +cd $TMP/${PRGNAM}${VERSION} # Include sample system files and example experimental data. mkdir -p $PKG/usr/share/$PRGNAM/{aa,codon,ctl,dat,nuc,paup,trees} diff --git a/academic/paml/paml.info b/academic/paml/paml.info index 4a56326c02..57cd450ab9 100644 --- a/academic/paml/paml.info +++ b/academic/paml/paml.info @@ -1,10 +1,10 @@ PRGNAM="paml" -VERSION="4.9c" +VERSION="4.9e" HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.9c.tgz \ - http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf" -MD5SUM="7c3638fdf19ec44b7b2636477d893de6 \ - 29c851d887eea56b949c01ab42cc48fb" +DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.9e.tgz \ + http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf" +MD5SUM="27930055f729f16f84ceb44c0f1581b9 \ + 29c851d887eea56b949c01ab42cc48fb" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" diff --git a/academic/paml/slack-desc b/academic/paml/slack-desc index 595ae82bba..521d3f5d99 100644 --- a/academic/paml/slack-desc +++ b/academic/paml/slack-desc @@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP, paml: MOLPHY, PhyML, RaxML, etc. paml: paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html -paml: References: /usr/doc/paml-4.9c/References +paml: References: /usr/doc/paml-4.9e/References |