diff options
Diffstat (limited to 'academic/megax/README')
-rw-r--r-- | academic/megax/README | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/academic/megax/README b/academic/megax/README new file mode 100644 index 0000000000..8cf4eee34c --- /dev/null +++ b/academic/megax/README @@ -0,0 +1,47 @@ +MEGA: Molecular Evolutionary Genetics Analysis + +Sophisticated and user-friendly software suite for analyzing DNA and +protein sequence data from species and populations. MEGA can be used +with either a graphical user interface, useful for visual exploration +of data and results or a command-line interface (useful for batch or +scripted execution). + +MEGA X +MEGA X is the GUI graphical user interface of MEGA and can be run in +one of two modes. The first mode is the "Analyze mode" in which all +GUI tools in MEGA are enabled and visual results explorers are +available for tasks such as editing sequence alignments and viewing +phylogenies. This is the mode that most MEGA users are familiar with. +The second mode is the Prototype mode which is used solely for +generating MEGA Analysis Options (.mao) files that specify analysis +settings when using MEGA from a command shell (megacc). In the MEGA +main form, click the Prototype button and then specify the type of +input data that will be used for analysis. + +MEGA CC +The command-line version of MEGA is 'megacc', that implements its core +analysis functions and is useful for iterative and automated execution. +The megacc command requires several options, including the path to a +.mao file and paths to input data file(s) to be analyzed. For example: + +$ megacc -a myMaoFile.mao -d mySequenceAlignment.fas -o myOutput + +Note 1. +Upon start, MEGA X will create an examples folder with the same name +in your user's home. This is a good place to start if you are not +familiar with MEGA. + +Note 2. +This SlackBuild just repackages the binaries for Debian, provided from +upstream. The RedHat packages, currently, do not have 32bit version. + +Note 3. IMPORTANT! +SlackBuilds.org thanks Prof. Kumar for permission to use the direct +download URL. MEGA is not free software. Your use is subject to the +licence agreement at: + +http://www.megasoftware.net/show_eua + +Citing: +MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger +datasets (Kumar, Stecher, and Tamura 2015). |