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+- Katoh, Frith 2012 (Bioinformatics Advance Access)
+  Adding unaligned sequences into an existing alignment using MAFFT
+  and LAST.
+  (describes the --add and --addfragments options)
+- Katoh, Toh 2010 (Bioinformatics 26:1899-1900)
+  Parallelization of the MAFFT multiple sequence alignment program.
+  (describes the multithread version)
+- Katoh, Asimenos, Toh 2009 (Methods in Molecular Biology 537:39-64)
+  Multiple Alignment of DNA Sequences with MAFFT. In Bioinformatics
+  for DNA Sequence Analysis edited by D. Posada
+  (outlines DNA alignment methods and several tips including
+  group-to-group alignment and rough clustering of a large
+  number of sequences)
+- Katoh, Toh 2008 (BMC Bioinformatics 9:212)
+  Improved accuracy of multiple ncRNA alignment by incorporating
+  structural information into a MAFFT-based framework.
+  (describes RNA structural alignment methods)
+- Katoh, Toh 2008 (Briefings in Bioinformatics 9:286-298)
+  Recent developments in the MAFFT multiple sequence alignment
+  program.
+  (outlines version 6; Fast Breaking Paper in Thomson Reuters'
+  ScienceWatch)
+- Katoh, Toh 2007 (Bioinformatics 23:372-374)  Errata
+  PartTree: an algorithm to build an approximate tree from a large
+  number of unaligned sequences.
+  (describes the PartTree algorithm)
+- Katoh, Kuma, Toh, Miyata 2005 (Nucleic Acids Res. 33:511-518)
+  MAFFT version 5: improvement in accuracy of multiple sequence
+  alignment.
+  (describes [ancestral versions of] the G-INS-i, L-INS-i and
+  E-INS-i strategies)
+- Katoh, Misawa, Kuma, Miyata 2002 (Nucleic Acids Res. 30:3059-3066)
+  MAFFT: a novel method for rapid multiple sequence alignment based
+  on fast Fourier transform.
+  (describes the FFT-NS-1, FFT-NS-2 and FFT-NS-i strategies)