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-rw-r--r--academic/cholmod/cholmod.SlackBuild6
-rw-r--r--academic/cholmod/cholmod.info6
-rw-r--r--academic/cholmod/patches/autoconfiscate.diff157
3 files changed, 88 insertions, 81 deletions
diff --git a/academic/cholmod/cholmod.SlackBuild b/academic/cholmod/cholmod.SlackBuild
index 042346c471..2116fba3e4 100644
--- a/academic/cholmod/cholmod.SlackBuild
+++ b/academic/cholmod/cholmod.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for CHOLMOD
-# Copyright 2013-2018 Kyle Guinn <elyk03@gmail.com>, USA
+# Copyright 2013-2019 Kyle Guinn <elyk03@gmail.com>
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -25,8 +25,8 @@
PRGNAM=cholmod
SRCNAM=SuiteSparse
SUBDIR=CHOLMOD
-VERSION=${VERSION:-3.0.12}
-SRCVER=${SRCVER:-5.2.0}
+VERSION=${VERSION:-3.0.13}
+SRCVER=${SRCVER:-5.4.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
diff --git a/academic/cholmod/cholmod.info b/academic/cholmod/cholmod.info
index 585dddc054..954e244269 100644
--- a/academic/cholmod/cholmod.info
+++ b/academic/cholmod/cholmod.info
@@ -1,8 +1,8 @@
PRGNAM="cholmod"
-VERSION="3.0.12"
+VERSION="3.0.13"
HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html"
-DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.2.0.tar.gz"
-MD5SUM="8e625539dbeed061cc62fbdfed9be7cf"
+DOWNLOAD="http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.4.0.tar.gz"
+MD5SUM="4a6d4e74fc44c503f52996ae95cad03a"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="blas lapack suitesparseconfig amd camd colamd ccolamd"
diff --git a/academic/cholmod/patches/autoconfiscate.diff b/academic/cholmod/patches/autoconfiscate.diff
index dd9746043c..66a831b846 100644
--- a/academic/cholmod/patches/autoconfiscate.diff
+++ b/academic/cholmod/patches/autoconfiscate.diff
@@ -1469,7 +1469,7 @@ new file mode 100644
+# Process this file with autoconf to produce a configure script.
+
+AC_PREREQ([2.69])
-+AC_INIT([CHOLMOD],[3.0.12],[DrTimothyAldenDavis@gmail.com],[cholmod],[http://www.suitesparse.com/])
++AC_INIT([CHOLMOD],[3.0.13],[DrTimothyAldenDavis@gmail.com],[cholmod],[http://www.suitesparse.com/])
+AC_CONFIG_SRCDIR([Core/cholmod_common.c])
+AC_CONFIG_AUX_DIR([build-aux])
+AC_CONFIG_MACRO_DIR([m4])
@@ -1666,7 +1666,7 @@ new file mode 100644
+
+AC_SUBST([CHOLMOD_REQUIRES])
+
-+PKG_INSTALLDIR
++m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])])
+AC_CONFIG_FILES([
+ cholmod.pc
+ Makefile
@@ -1756,11 +1756,11 @@ new file mode 100644
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
-+#serial 15
++#serial 16
+
+AU_ALIAS([ACX_BLAS], [AX_BLAS])
+AC_DEFUN([AX_BLAS], [
-+AC_PREREQ(2.50)
++AC_PREREQ([2.55])
+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
+AC_REQUIRE([AC_CANONICAL_HOST])
+ax_blas_ok=no
@@ -1786,7 +1786,7 @@ new file mode 100644
+if test "x$BLAS_LIBS" != x; then
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
-+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
++ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes], [BLAS_LIBS=""])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
@@ -1796,7 +1796,7 @@ new file mode 100644
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="$LIBS"
+ AC_MSG_CHECKING([if $sgemm is being linked in already])
-+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
++ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
@@ -1867,7 +1867,7 @@ new file mode 100644
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
+ AC_MSG_CHECKING([for $sgemm in -framework vecLib])
-+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
++ AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
@@ -1933,7 +1933,7 @@ diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4
new file mode 100644
--- /dev/null
+++ b/m4/ax_code_coverage.m4
-@@ -0,0 +1,264 @@
+@@ -0,0 +1,271 @@
+# ===========================================================================
+# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html
+# ===========================================================================
@@ -2011,68 +2011,48 @@ new file mode 100644
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program. If not, see <https://www.gnu.org/licenses/>.
+
-+#serial 24
++#serial 27
+
-+AC_DEFUN([AX_CODE_COVERAGE],[
-+ dnl Check for --enable-code-coverage
-+ AC_REQUIRE([AC_PROG_SED])
++AC_DEFUN([_AX_CODE_COVERAGE_ENABLED],[
++ # check for gcov
++ AC_CHECK_TOOL([GCOV],
++ [$_AX_CODE_COVERAGE_GCOV_PROG_WITH],
++ [:])
++ AS_IF([test "X$GCOV" = "X:"],
++ [AC_MSG_ERROR([gcov is needed to do coverage])])
++ AC_SUBST([GCOV])
+
-+ # allow to override gcov location
-+ AC_ARG_WITH([gcov],
-+ [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])],
-+ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov],
-+ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov])
++ dnl Check if gcc is being used
++ AS_IF([ test "$GCC" = "no" ], [
++ AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage])
++ ])
+
-+ AC_MSG_CHECKING([whether to build with code coverage support])
-+ AC_ARG_ENABLE([code-coverage],
-+ AS_HELP_STRING([--enable-code-coverage],
-+ [Whether to enable code coverage support]),,
-+ enable_code_coverage=no)
++ AC_CHECK_PROG([LCOV], [lcov], [lcov])
++ AC_CHECK_PROG([GENHTML], [genhtml], [genhtml])
+
-+ AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test x$enable_code_coverage = xyes])
-+ AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage])
-+ AC_MSG_RESULT($enable_code_coverage)
++ AS_IF([ test x"$LCOV" = x ], [
++ AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed])
++ ])
+
-+ AS_IF([ test "$enable_code_coverage" = "yes" ], [
-+ # check for gcov
-+ AC_CHECK_TOOL([GCOV],
-+ [$_AX_CODE_COVERAGE_GCOV_PROG_WITH],
-+ [:])
-+ AS_IF([test "X$GCOV" = "X:"],
-+ [AC_MSG_ERROR([gcov is needed to do coverage])])
-+ AC_SUBST([GCOV])
-+
-+ dnl Check if gcc is being used
-+ AS_IF([ test "$GCC" = "no" ], [
-+ AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage])
-+ ])
-+
-+ AC_CHECK_PROG([LCOV], [lcov], [lcov])
-+ AC_CHECK_PROG([GENHTML], [genhtml], [genhtml])
-+
-+ AS_IF([ test -z "$LCOV" ], [
-+ AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed])
-+ ])
-+
-+ AS_IF([ test -z "$GENHTML" ], [
-+ AC_MSG_ERROR([Could not find genhtml from the lcov package])
-+ ])
-+
-+ dnl Build the code coverage flags
-+ dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility
-+ CODE_COVERAGE_CPPFLAGS="-DNDEBUG"
-+ CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
-+ CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
-+ CODE_COVERAGE_LIBS="-lgcov"
-+ CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS"
-+
-+ AC_SUBST([CODE_COVERAGE_CPPFLAGS])
-+ AC_SUBST([CODE_COVERAGE_CFLAGS])
-+ AC_SUBST([CODE_COVERAGE_CXXFLAGS])
-+ AC_SUBST([CODE_COVERAGE_LIBS])
-+ AC_SUBST([CODE_COVERAGE_LDFLAGS])
-+
-+ [CODE_COVERAGE_RULES_CHECK='
++ AS_IF([ test x"$GENHTML" = x ], [
++ AC_MSG_ERROR([Could not find genhtml from the lcov package])
++ ])
++
++ dnl Build the code coverage flags
++ dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility
++ CODE_COVERAGE_CPPFLAGS="-DNDEBUG"
++ CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
++ CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
++ CODE_COVERAGE_LIBS="-lgcov"
++ CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS"
++
++ AC_SUBST([CODE_COVERAGE_CPPFLAGS])
++ AC_SUBST([CODE_COVERAGE_CFLAGS])
++ AC_SUBST([CODE_COVERAGE_CXXFLAGS])
++ AC_SUBST([CODE_COVERAGE_LIBS])
++ AC_SUBST([CODE_COVERAGE_LDFLAGS])
++
++ [CODE_COVERAGE_RULES_CHECK='
+ -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check
+ $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture
+']
@@ -2091,12 +2071,39 @@ new file mode 100644
+ -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY)
+ -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete
+']
-+ ], [
-+ [CODE_COVERAGE_RULES_CHECK='
++])
++
++AC_DEFUN([_AX_CODE_COVERAGE_DISABLED],[
++ [CODE_COVERAGE_RULES_CHECK='
+ @echo "Need to reconfigure with --enable-code-coverage"
-+']
-+ CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK"
-+ CODE_COVERAGE_RULES_CLEAN=''
++ ']
++ CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK"
++ CODE_COVERAGE_RULES_CLEAN=''
++])
++
++AC_DEFUN([AX_CODE_COVERAGE],[
++ dnl Check for --enable-code-coverage
++
++ # allow to override gcov location
++ AC_ARG_WITH([gcov],
++ [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])],
++ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov],
++ [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov])
++
++ AC_MSG_CHECKING([whether to build with code coverage support])
++ AC_ARG_ENABLE([code-coverage],
++ AS_HELP_STRING([--enable-code-coverage],
++ [Whether to enable code coverage support]),,
++ enable_code_coverage=no)
++
++ AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test "x$enable_code_coverage" = xyes])
++ AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage])
++ AC_MSG_RESULT($enable_code_coverage)
++
++ AS_IF([ test "x$enable_code_coverage" = xyes ], [
++ _AX_CODE_COVERAGE_ENABLED
++ ], [
++ _AX_CODE_COVERAGE_DISABLED
+ ])
+
+[CODE_COVERAGE_RULES='
@@ -2157,6 +2164,9 @@ new file mode 100644
+CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
+CODE_COVERAGE_IGNORE_PATTERN ?=
+
++GITIGNOREFILES ?=
++GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY)
++
+code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V))
+code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY))
+code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\
@@ -2186,9 +2196,6 @@ new file mode 100644
+
+'"$CODE_COVERAGE_RULES_CLEAN"'
+
-+GITIGNOREFILES ?=
-+GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY)
-+
+A''M_DISTCHECK_CONFIGURE_FLAGS ?=
+A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage
+
@@ -2269,7 +2276,7 @@ new file mode 100644
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
-+#serial 8
++#serial 9
+
+AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
+AC_DEFUN([AX_LAPACK], [
@@ -2298,7 +2305,7 @@ new file mode 100644
+if test "x$LAPACK_LIBS" != x; then
+ save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
+ AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
-+ AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""])
++ AC_LINK_IFELSE([AC_LANG_CALL([], [$cheev])], [ax_lapack_ok=yes], [LAPACK_LIBS=""])
+ AC_MSG_RESULT($ax_lapack_ok)
+ LIBS="$save_LIBS"
+ if test $ax_lapack_ok = no; then
generated by cgit v1.2.3 (git 2.26.2) at 2024-11-22 12:39:09 +0000