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Diffstat (limited to 'academic/bedtools/README')
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diff --git a/academic/bedtools/README b/academic/bedtools/README new file mode 100644 index 0000000000..d9e5aa3fd4 --- /dev/null +++ b/academic/bedtools/README @@ -0,0 +1,11 @@ +Collectively, the bedtools utilities are a swiss-army knife of tools +for a wide-range of genomics analysis tasks. The most widely-used +tools enable genome arithmetic: that is, set theory on the genome. For +example, bedtools allows one to intersect, merge, count, complement, +and shuffle genomic intervals from multiple files in widely-used +genomic file formats such as BAM, BED, GFF/GTF, VCF. + +While each individual tool is designed to do a relatively simple task +(e.g., intersect two interval files), quite sophisticated analyses can +be conducted by combining multiple bedtools operations on the UNIX +command line. |