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diff --git a/academic/amplifx/README b/academic/amplifx/README new file mode 100644 index 0000000000..c5394bb809 --- /dev/null +++ b/academic/amplifx/README @@ -0,0 +1,37 @@ +AmplifX: Manage, test and design your primers for PCR. + +The main purpose of AmplifX is to seek in a collection of primers, +such as any molecular biologist get in his refrigerators, those which +can be use to amplify a fragment into a target sequence, for example, +and particularly, to design strategies to screen recombinant clones by +PCR. Main features: + +Manage your primers +- Import or easily create primer lists +- Name,comment, sort primers +- Share simply primer lists (automatic lockout in read only mode of + files yet opened by an other user) +- Automatic calculation of quality score (TM [Santa-Lucia method], + length, GC%, autodimer, complexity, etc.) +- Works with degenerate sequences + +Test your primers +- Localise your primers on target sequences (main file formats + supported and "intelligent" copy-paste) +- Prediction of amplified sequences +- Interactive graphic map +- Pertinent informations on matches and amplicons (TM, size, predicted + dimers, etc.) + +Design your primers +- Simple and intuitive interface to design new primers for amplifying + a fragment choosing the amplicon size and/or the position +- Many of design options + +NOTE: +This is just repackaging of the ready binary for x86 and will not run +on x86_64. It will probably work fine on a Slackware multilib box. + +How to cite AmplifX: +AmplifX X.X.X [version number] by Nicolas Jullien; CNRS, Aix-Marseille +Université - http://crn2m.univ-mrs.fr/pub/amplifx-dist |