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Diffstat (limited to 'academic/aliview/README')
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1 files changed, 21 insertions, 21 deletions
diff --git a/academic/aliview/README b/academic/aliview/README index d9e65dc923..6d6a532cd1 100644 --- a/academic/aliview/README +++ b/academic/aliview/README @@ -1,36 +1,36 @@ AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use. Features: -- fast and light-weight +- fast and light-weight - simple navigation, mouse-wheel zoom out and zoom in - highlight consensus characters or characters deviating - edit sequences/alignment (manually) -- align, add and align automatically with any aligner of your choice -- align new sequences to existing or realign all -- realign a selected block -- realign nucleotides as translated amino-acids -- delete vertical gaps -- undo/redo +- align, add and align automatically with any aligner of your choice +- align new sequences to existing or realign all +- realign a selected block +- realign nucleotides as translated amino-acids +- delete vertical gaps +- undo/redo - find degenerate primers in conserved regions in an alignment - open and save in FASTA, NEXUS, PHYLIP, CLUSTAL or MSF format -- print (current view) -- export whole alignment as an image file (png-format) -- copy selection (as fasta-sequences or just characters) -- paste sequences (as sequences or filenames) -- add more sequences from file +- print (current view) +- export whole alignment as an image file (png-format) +- copy selection (as fasta-sequences or just characters) +- paste sequences (as sequences or filenames) +- add more sequences from file - merge two sequences - and calculate consensus -- translate (view) nucleotide sequences as amino-acid sequences -- save translated alignment -- read / preserve Codonpos, Charset and Excludes (Nexus-specification) -- change Codonpos for selected regions (Nexus-specification) -- drag-drop/remove of sequences/files -- move sequences to top/bottom with key-stroke +- translate (view) nucleotide sequences as amino-acid sequences +- save translated alignment +- read / preserve Codonpos, Charset and Excludes (Nexus-specification) +- change Codonpos for selected regions (Nexus-specification) +- drag-drop/remove of sequences/files +- move sequences to top/bottom with key-stroke - a simple "external interface" that lets you invoke other programs - search function that finds patterns across gaps and follows IUPAC -- search multiple sequence names at once (stored in clipboard) -- reverse complement/reverse/complement sequences or whole alignment +- search multiple sequence names at once (stored in clipboard) +- reverse complement/reverse/complement sequences or whole alignment - different color schemes -- sort sequences by name +- sort sequences by name - sort sequences by residue in selected column Citation: |