diff options
Diffstat (limited to 'academic/RBio')
| -rw-r--r-- | academic/RBio/RBio.SlackBuild | 76 | ||||
| -rw-r--r-- | academic/RBio/RBio.info | 10 | ||||
| -rw-r--r-- | academic/RBio/README | 7 | ||||
| -rw-r--r-- | academic/RBio/autotoolize.diff | 191 | ||||
| -rw-r--r-- | academic/RBio/slack-desc | 19 |
5 files changed, 303 insertions, 0 deletions
diff --git a/academic/RBio/RBio.SlackBuild b/academic/RBio/RBio.SlackBuild new file mode 100644 index 0000000000..eb0baa0876 --- /dev/null +++ b/academic/RBio/RBio.SlackBuild @@ -0,0 +1,76 @@ +#!/bin/sh + +# Slackware build script for RBio +# Written by Kyle Guinn <elyk03@gmail.com> + +PRGNAM=RBio +VERSION=${VERSION:-2.0.0} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +if [ -z "$ARCH" ]; then + case "$(uname -m)" in + i?86) ARCH=i486 ;; + arm*) ARCH=arm ;; + *) ARCH=$(uname -m) ;; + esac +fi + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +DOCS="README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt" + +if [ "$ARCH" = "i486" ]; then + SLKCFLAGS="-O2 -march=i486 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM +tar xvf $CWD/$PRGNAM.tar.gz +cd $PRGNAM +chown -R root:root . +chmod -R u+w,go+r-w,a-st . + +patch -p1 < $CWD/autotoolize.diff +autoreconf -vif + +CFLAGS="$SLKCFLAGS" \ +CXXFLAGS="$SLKCFLAGS" \ +./configure \ + --prefix=/usr \ + --libdir=/usr/lib${LIBDIRSUFFIX} \ + --sysconfdir=/etc \ + --localstatedir=/var \ + --mandir=/usr/man \ + --docdir=/usr/doc/$PRGNAM-$VERSION \ + --build=$ARCH-slackware-linux + +make +make install-strip DESTDIR=$PKG + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/RBio/RBio.info b/academic/RBio/RBio.info new file mode 100644 index 0000000000..da7767316d --- /dev/null +++ b/academic/RBio/RBio.info @@ -0,0 +1,10 @@ +PRGNAM="RBio" +VERSION="2.0.0" +HOMEPAGE="http://www.cise.ufl.edu/research/sparse/RBio/" +DOWNLOAD="http://www.cise.ufl.edu/research/sparse/RBio/current/RBio.tar.gz" +MD5SUM="c27563fce30d45b5a0ee33ccde035005" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +MAINTAINER="Kyle Guinn" +EMAIL="elyk03@gmail.com" +APPROVED="dsomero" diff --git a/academic/RBio/README b/academic/RBio/README new file mode 100644 index 0000000000..5b5398cd52 --- /dev/null +++ b/academic/RBio/README @@ -0,0 +1,7 @@ +RBio - MATLAB toolbox for reading/writing sparse matrices in the +Rutherford/Boeing format, and for reading/writing problems in the UF +Sparse Matrix Collection from/to a set of files in a directory. + +This package is part of SuiteSparse. + +Requires UFconfig. diff --git a/academic/RBio/autotoolize.diff b/academic/RBio/autotoolize.diff new file mode 100644 index 0000000000..709474efa6 --- /dev/null +++ b/academic/RBio/autotoolize.diff @@ -0,0 +1,191 @@ +diff --git a/Demo/Makefile.am b/Demo/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Demo/Makefile.am +@@ -0,0 +1,16 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include ++LDADD = $(top_builddir)/Source/librbio.la -lufconfig ++ ++check_PROGRAMS = \ ++ RBdemo ++ ++RBdemo_SOURCES = RBdemo.c ++ ++RB = \ ++ ../RBio/private/west0479.rua ++ ++check-local: $(check_PROGRAMS) $(RB) ++ ./RBdemo < ../RBio/private/west0479.rua ++ ++clean-local: ++ -$(RM) temp.rb +diff --git a/Makefile.am b/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Makefile.am +@@ -0,0 +1,3 @@ ++SUBDIRS = Source RBio/private Demo Tcov ++EXTRA_DIST = README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt ++include_HEADERS = Include/RBio.h +diff --git a/RBio/private/Makefile.am b/RBio/private/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/RBio/private/Makefile.am +@@ -0,0 +1,7 @@ ++dist_noinst_DATA = \ ++ bcsstk01.rb \ ++ farm.rb \ ++ lap_25.pse \ ++ lap_25.rb \ ++ west0479.rb \ ++ west0479.rua +diff --git a/Source/Makefile.am b/Source/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Source/Makefile.am +@@ -0,0 +1,16 @@ ++AM_CPPFLAGS = -I$(top_srcdir)/Include ++ ++RBIOSRC = \ ++ RBio.c ++ ++lib_LTLIBRARIES = librbio.la ++noinst_LTLIBRARIES = librbioi.la librbiol.la ++ ++librbioi_la_SOURCES = $(RBIOSRC) ++librbioi_la_CPPFLAGS = $(AM_CPPFLAGS) -DINT ++ ++librbiol_la_SOURCES = $(RBIOSRC) ++ ++librbio_la_SOURCES = ++librbio_la_LIBADD = librbioi.la librbiol.la ++librbio_la_LDFLAGS = -no-undefined -version-info 2:0:0 +diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am +new file mode 100644 +--- /dev/null ++++ b/Tcov/Makefile.am +@@ -0,0 +1,94 @@ ++AM_CC = gcc ++AM_CFLAGS = -O0 -g --coverage ++AM_CPPFLAGS = -I$(top_srcdir)/Include ++LDADD = -lufconfig ++ ++dist_noinst_DATA = \ ++ matrices/Tina_DisCog.tar.gz \ ++ matrices/dwg961a.tar.gz \ ++ matrices/m4.rb \ ++ matrices/m4b.rb \ ++ matrices/mhd1280a.tar.gz \ ++ matrices/mhd1280b.tar.gz \ ++ matrices/plskz362.tar.gz \ ++ matrices/qc324.tar.gz \ ++ matrices/s4.rb \ ++ matrices/west0067.tar.gz \ ++ mangled/1.rb \ ++ mangled/2.rb \ ++ mangled/3.rb \ ++ mangled/4.rb \ ++ mangled/5.rb \ ++ mangled/6.rb \ ++ mangled/7.rb \ ++ mangled/8.rb \ ++ mangled/9.rb \ ++ mangled/10.rb \ ++ mangled/11.rb \ ++ mangled/12.rb \ ++ mangled/13.rb \ ++ mangled/14.rb \ ++ mangled/15.rb ++ ++check_PROGRAMS = \ ++ RBdemo \ ++ RBtest ++ ++RBio.c: ../Source/RBio.c ++ $(LN_S) -f $< $@ ++ ++RBdemo.c: ../Demo/RBdemo.c ++ $(LN_S) -f $< $@ ++ ++RBdemo_SOURCES = RBdemo.c RBio.c ++RBtest_SOURCES = RBtest.c RBio.c ++ ++TAR = tar -O -xvvzf ++ ++RB = \ ++ ../RBio/private/bcsstk01.rb \ ++ ../RBio/private/farm.rb \ ++ ../RBio/private/lap_25.pse \ ++ ../RBio/private/lap_25.rb \ ++ ../RBio/private/west0479.rb \ ++ ../RBio/private/west0479.rua \ ++ $(dist_noinst_DATA) ++ ++check-local: $(check_PROGRAMS) $(RB) ++ -./RBdemo ../RBio/private/bcsstk01.rb ++ -./RBdemo ../RBio/private/farm.rb ++ -./RBdemo ../RBio/private/lap_25.pse ++ -./RBdemo ../RBio/private/lap_25.rb ++ -./RBdemo ../RBio/private/west0479.rb ++ -./RBdemo ../RBio/private/west0479.rua ++ -$(TAR) matrices/dwg961a.tar.gz dwg961a/dwg961a.rb | ./RBdemo ++ -$(TAR) matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb | ./RBdemo ++ -$(TAR) matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb | ./RBdemo ++ -$(TAR) matrices/qc324.tar.gz qc324/qc324.rb | ./RBdemo ++ -$(TAR) matrices/plskz362.tar.gz plskz362/plskz362.rb | ./RBdemo ++ -$(TAR) matrices/west0067.tar.gz west0067/west0067.rb | ./RBdemo ++ -$(TAR) matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo ++ -./RBdemo matrices/m4.rb ++ -./RBdemo matrices/s4.rb ++ -./RBdemo matrices/m4b.rb ++ -./RBdemo mangled/1.rb ++ -./RBdemo mangled/2.rb ++ -./RBdemo mangled/3.rb ++ -./RBdemo mangled/4.rb ++ -./RBdemo mangled/5.rb ++ -./RBdemo mangled/6.rb ++ -./RBdemo mangled/7.rb ++ -./RBdemo mangled/8.rb ++ -./RBdemo mangled/9.rb ++ -./RBdemo mangled/10.rb ++ -./RBdemo mangled/11.rb ++ -./RBdemo mangled/12.rb ++ -./RBdemo mangled/13.rb ++ -./RBdemo mangled/14.rb ++ -./RBdemo mangled/15.rb ++ -./RBtest ++ -gcov *.c > gcov.out ++ -grep "#####" RBio.c.gcov | wc -l ++ ++clean-local: ++ -$(RM) gcov.out *.gcov *.gcda *.gcno temp*.rb +diff --git a/configure.ac b/configure.ac +new file mode 100644 +--- /dev/null ++++ b/configure.ac +@@ -0,0 +1,25 @@ ++AC_PREREQ([2.65]) ++AC_INIT([RBio], [2.0.0], [davis@cise.ufl.edu]) ++AC_CONFIG_SRCDIR([Source/RBio.c]) ++AC_CONFIG_HEADER([config.h]) ++AM_INIT_AUTOMAKE([foreign]) ++LT_INIT ++ ++AC_PROG_INSTALL ++AC_PROG_CC ++ ++LIBS_SAVED=$LIBS ++ ++AC_CHECK_LIB([ufconfig], [UFmalloc]) ++ ++AC_CHECK_HEADERS([stddef.h stdlib.h string.h]) ++ ++LIBS=$LIBS_SAVED ++ ++AC_CONFIG_FILES([ ++ Makefile ++ Demo/Makefile ++ RBio/private/Makefile ++ Source/Makefile ++ Tcov/Makefile]) ++AC_OUTPUT diff --git a/academic/RBio/slack-desc b/academic/RBio/slack-desc new file mode 100644 index 0000000000..6522449794 --- /dev/null +++ b/academic/RBio/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. Line +# up the first '|' above the ':' following the base package name, and the '|' +# on the right side marks the last column you can put a character in. You must +# make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':'. + + |-----handy-ruler------------------------------------------------------| +RBio: RBio (sparse matrix I/O routines) +RBio: +RBio: RBio - MATLAB toolbox for reading/writing sparse matrices in the +RBio: Rutherford/Boeing format, and for reading/writing problems in the +RBio: UF Sparse Matrix Collection from/to a set of files in a directory. +RBio: +RBio: +RBio: +RBio: +RBio: +RBio: |