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diff --git a/academic/PhyML/README b/academic/PhyML/README index 87e9b170db..b52080e622 100644 --- a/academic/PhyML/README +++ b/academic/PhyML/README @@ -1,16 +1,16 @@ -PhyML is a software that estimates maximum likelihood phylogenies -from alignments of nucleotide or amino acid sequences. It provides a -wide range of options that were designed to facilitate standard -phylogenetic analyses. The main strengths of PhyML lies in the large -number of substitution models coupled to various options to search -the space of phylogenetic tree topologies, going from very fast and -efficient methods to slower but generally more accurate approaches. -It also implements two methods to evaluate branch supports in a sound -statistical framework (the non-parametric bootstrap and the +PhyML is a software that estimates maximum likelihood phylogenies +from alignments of nucleotide or amino acid sequences. It provides a +wide range of options that were designed to facilitate standard +phylogenetic analyses. The main strengths of PhyML lies in the large +number of substitution models coupled to various options to search +the space of phylogenetic tree topologies, going from very fast and +efficient methods to slower but generally more accurate approaches. +It also implements two methods to evaluate branch supports in a sound +statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). For details and citation -New Algorithms and Methods to Estimate Maximum-Likelihood -Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., -Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. +New Algorithms and Methods to Estimate Maximum-Likelihood +Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S., +Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. Systematic Biology, 59(3):307-21, 2010. |