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diff --git a/academic/EMBASSY/CONTENTS b/academic/EMBASSY/CONTENTS new file mode 100644 index 0000000000..d739dcfb71 --- /dev/null +++ b/academic/EMBASSY/CONTENTS @@ -0,0 +1,94 @@ +The EMBASSY package includes the following: +------------------------------------------- + +DOMAINATRIX Previous distributions of the protein domain programs from +Jon Ison's group were in a single EMBASSY package. This is now split +into 5 packages according to function. + +Application details and documentation for DOMAINATRIX + +DOMAINATRIX is available as a Beta release 0.1.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMAINATRIX-0.1.0.tar.gz + +Application details and documentation for DOMALIGN + +DOMALIGN is available as a Beta release 0.1.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMALIGN-0.1.0.tar.gz + +Application details and documentation for DOMSEARCH + +DOMSEARCH is available as a Beta release 0.1.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file DOMSEARCH-0.1.0.tar.gz + +Application details and documentation for SIGNATURE + +SIGNATURE is available as a Beta release 0.1.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file SIGNATURE-0.1.0.tar.gz + +Application details and documentation for STRUCTURE + +STRUCTURE is available as a Beta release 0.1.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file STRUCTURE-0.1.0.tar.gz EMNU +(EMBOSS Menu is Not UNIX) Application details and documentation for EMNU + +EMNU is available as release 1.05 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file EMNU-1.05.tar.gz ESIM4 +(EMBOSS version of SIM4) Application details and documentation for ESIM4 + +ESIM4 is available as release 1.0.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file ESIM4-1.0.0.tar.gz HMMER +(EMBOSS version of HMMER 2.1.1 - PLEASE USE HMMERNEW) Application details +and documentation for HMMER + +HMMER is available as release 2.1.1 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.1.1.tar.gz HMMERNEW +(EMBOSS version of HMMER 2.3.2) Application details and documentation +for HMMERNEW + +HMMER 2.3.2 is available from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file HMMER-2.3.2.tar.gz +MEME (previous EMBOSS version of MEME 2.3.1) Application details and +documentation for MEME + +MEME is available as release 2.3.1 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEME-2.3.1.tar.gz MEMENEW +(EMBOSS version of MEME 3.0.14) Application details and documentation +for MEMENEW which wraps release 3.0.14 of the Meme package + +MEMENEW is available as release 0.1.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file MEMENEW-0.1.0.tar.gz +MSE (A Multiple Sequence Screen Editor for Biological Sequences.) +Application details and documentation for MSE + +MSE is available as release 1.0.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file MSE-1.0.0.tar.gz MYEMBOSS +(For sites to build their own applications) Application details and +documentation for MYEMBOSS + +MYEMBOSS provides a directory structure and makefile stubs for developing +your own applications more easily than in versions before 3.0.0. + +MYEMBOSS requires autoconf, automake and libtool to be installed. See +the INSTALL file for more informations. + +MYEMBOSS is available as release 1.0.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file MYEMBOSS-1.0.0.tar.gz PHYLIP +(Phylogeny Inference Package) Application details and documentation for +PHYLIP and PHYLIPNEW. + +PHYLIP 3.572 was available as an EMBASSY package with previous +releases. From 3.0.0 we are including a beta test conversion of PHYLIP +3.61 (PHYLIPNEW). Program names now begin with 'f' rather than 'e' +and interfaces are more EMBOSS-like. Please pass on feedback to our bug +reporting list emboss-bug@emboss.open-bio.org + +PHYLIPNEW is available as a Beta release 3.6b from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file PHYLIP-3.6b.tar.gz TOPO +(Transmembrane display) Application details and documentation for TOPO + +TOPO is available as release 1.0.0 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file TOPO-1.0.0.tar.gz Vienna +RNA package Application details and documentation for VIENNA + +Vienna is available as release 1.6 from our FTP server +ftp://emboss.open-bio.org/pub/EMBOSS/ in file VIENNA-1.6.tar.gz |