diff options
| -rw-r--r-- | academic/vcftools/make.patch | 17 | ||||
| -rw-r--r-- | academic/vcftools/slack-desc | 2 | ||||
| -rw-r--r-- | academic/vcftools/vcftools.SlackBuild | 11 | ||||
| -rw-r--r-- | academic/vcftools/vcftools.info | 6 |
4 files changed, 20 insertions, 16 deletions
diff --git a/academic/vcftools/make.patch b/academic/vcftools/make.patch index f7cc48b93d..7c3ff55deb 100644 --- a/academic/vcftools/make.patch +++ b/academic/vcftools/make.patch @@ -1,15 +1,18 @@ -Description: do not use MAKEFLAGS +Description: do not use MAKEFLAGS and not MANDIR Author: Thorsten Alteholz <debian@alteholz.de> -Last-Update: 2011-07-03 -Index: vcftools-0.1.7/Makefile +Last-Update: 2014-04-03 +Index: vcftools_0.1.12/Makefile =================================================================== ---- vcftools_0.1.7.org/Makefile 2011-07-04 15:22:33.000000000 +0200 -+++ vcftools_0.1.7/Makefile 2011-07-04 15:22:56.000000000 +0200 -@@ -22,7 +22,7 @@ +--- vcftools_0.1.12.orig/Makefile 2014-04-04 10:37:59.000000000 +0200 ++++ vcftools_0.1.12/Makefile 2014-04-04 10:38:34.000000000 +0200 +@@ -25,9 +25,8 @@ + DIRS = cpp perl install: - @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \ +- @mkdir -p $(BINDIR); mkdir -p $(MODDIR); mkdir -p $(MANDIR); \ +- cp ${PREFIX}/cpp/vcftools.1.gz $(MANDIR); \ - for dir in $(DIRS); do cd $$dir && $(MAKE) $(MAKEFLAGS) && cd ..; done ++ @mkdir -p $(BINDIR); mkdir -p $(MODDIR); \ + for dir in $(DIRS); do cd $$dir && $(MAKE) && cd ..; done clean: diff --git a/academic/vcftools/slack-desc b/academic/vcftools/slack-desc index a15655731f..6589ecf88c 100644 --- a/academic/vcftools/slack-desc +++ b/academic/vcftools/slack-desc @@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some vcftools: basic population genetic statistics. vcftools: vcftools: Home: http://vcftools.sourceforge.net/ -vcftools: References: /usr/doc/vcftools-0.1.11/References +vcftools: References: /usr/doc/vcftools-0.1.12a/References vcftools: diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild index 506bba88d1..4c69a76a95 100644 --- a/academic/vcftools/vcftools.SlackBuild +++ b/academic/vcftools/vcftools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vcftools -# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=vcftools -VERSION=${VERSION:-0.1.11} +VERSION=${VERSION:-0.1.12a} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -83,6 +83,9 @@ CPPFLAGS="$SLKCFLAGS" \ PREFIX=$PKG/usr \ make install +# Copy man page +install -D -m644 cpp/vcftools.1.gz $PKG/usr/man/man1/vcftools.1.gz + # Copy examples mkdir -p $PKG/usr/share/$PRGNAM cp -a examples $PKG/usr/share/$PRGNAM @@ -91,9 +94,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - README.txt perl/ChangeLog website/*.pdf \ - $PKG/usr/doc/$PRGNAM-$VERSION +cp -a README.txt perl/ChangeLog website/*.pdf $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info index b754295189..77a7dab1c5 100644 --- a/academic/vcftools/vcftools.info +++ b/academic/vcftools/vcftools.info @@ -1,8 +1,8 @@ PRGNAM="vcftools" -VERSION="0.1.11" +VERSION="0.1.12a" HOMEPAGE="http://vcftools.sourceforge.net/" -DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.11.tar.gz" -MD5SUM="ddb49e9fa2bfedae36b4dce163adfaa8" +DOWNLOAD="http://sourceforge.net/projects/vcftools/files/vcftools_0.1.12a.tar.gz" +MD5SUM="ca2ab768ed741623263dbe123cac428b" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |