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-rw-r--r--academic/ImageJ/ImageJ.SlackBuild27
-rw-r--r--academic/ImageJ/ImageJ.info10
-rw-r--r--academic/ImageJ/README10
-rw-r--r--academic/ImageJ/slack-desc10
4 files changed, 22 insertions, 35 deletions
diff --git a/academic/ImageJ/ImageJ.SlackBuild b/academic/ImageJ/ImageJ.SlackBuild
index a10cf37730..5d230524af 100644
--- a/academic/ImageJ/ImageJ.SlackBuild
+++ b/academic/ImageJ/ImageJ.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ImageJ
-# Copyright 2012 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2012-2013 Petar Petrov, ppetrov@paju.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -22,19 +22,19 @@
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-PRGNAM=ImageJ
-VERSION=${VERSION:-1.45}
+PRGNAM=ImageJ
+VERSION=${VERSION:-1.46}
ARCH=noarch
BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
+TAG=${TAG:-_SBo}
SRCNAM=ij
-SRCVER=145
+SRCVER=146
CWD=$(pwd)
-TMP=${TMP:-/tmp/SBo}
+TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
+OUTPUT=${OUTPUT:-/tmp}
set -e
@@ -44,7 +44,6 @@ cd $TMP
rm -rf $PRGNAM
unzip $CWD/${SRCNAM}${SRCVER}.zip
cd $PRGNAM
-unzip $CWD/ucsd-plugins.zip
chown -R root:root .
find . \
\( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
@@ -55,22 +54,16 @@ find . \
mkdir -p $PKG/usr/share/$PRGNAM
cp -a luts macros plugins ij.jar $PKG/usr/share/$PRGNAM
-# Install bio-formats plugins
-mkdir -p $PKG/usr/share/$PRGNAM/plugins/LOCI
-cp -a $CWD/loci_tools.jar $PKG/usr/share/$PRGNAM/plugins/LOCI
-
-# Install UCSD confocal microscopy plugins
-cp -a UCSD\ Plugins $PKG/usr/share/$PRGNAM/plugins/
-
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a README.html $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
# Fix permissions
find $PKG -type d -exec chmod 755 {} \; -o \
- -type f -exec chmod 644 {} \;
+ -type f -exec chmod 644 {} \;
-# Install wrapper of ij.jar
+# Install the wrapper of ij.jar, taken from the link below:
+# http://rsb.info.nih.gov/ij/download/linux/unix-script.txt
install -D -m755 $CWD/imagej $PKG/usr/bin/imagej
mkdir -p $PKG/usr/share/{applications,pixmaps}
diff --git a/academic/ImageJ/ImageJ.info b/academic/ImageJ/ImageJ.info
index 00fe254697..5bd65d54f4 100644
--- a/academic/ImageJ/ImageJ.info
+++ b/academic/ImageJ/ImageJ.info
@@ -1,12 +1,8 @@
PRGNAM="ImageJ"
-VERSION="1.45"
+VERSION="1.46"
HOMEPAGE="http://rsb.info.nih.gov/ij/"
-DOWNLOAD="http://rsb.info.nih.gov/ij/download/zips/ij145.zip \
- http://www.loci.wisc.edu/files/software/loci_tools.jar \
- http://rsbweb.nih.gov/ij/plugins/download/ucsd-plugins.zip"
-MD5SUM="c0e0202c4a358e886ce1582dd2c9b830 \
- 2914600d36ce0c077526a0380b59f099 \
- 277dec926cc27ade8ef01b8ae4bb69cb"
+DOWNLOAD="http://rsb.info.nih.gov/ij/download/zips/ij146.zip"
+MD5SUM="61b96882acc037e72d5da3c41396cad6"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
diff --git a/academic/ImageJ/README b/academic/ImageJ/README
index 3c15f5325e..75120f2ee0 100644
--- a/academic/ImageJ/README
+++ b/academic/ImageJ/README
@@ -26,9 +26,7 @@ ImageJ was designed with an open architecture that provides
extensibility via Java plugins. User-written plugins make it possible
to solve almost any image processing or analysis problem.
-This includes the following additional plugins:
-1) Bio-Formats.
-2) UCSD confocal microscopy plugins.
-
-For a complete list of available plugins, check the corresponding
-section at the program website.
+NOTE ABOUT PLUGINS:
+If you are looking for additional features, search for ImageJ plugins
+already available at SBo (ij-plugins-*) or check the program website
+for more.
diff --git a/academic/ImageJ/slack-desc b/academic/ImageJ/slack-desc
index 637ac00056..f74d9aff79 100644
--- a/academic/ImageJ/slack-desc
+++ b/academic/ImageJ/slack-desc
@@ -1,9 +1,9 @@
# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description. Line
-# up the first '|' above the ':' following the base package name, and the '|'
-# on the right side marks the last column you can put a character in. You must
-# make exactly 11 lines for the formatting to be correct. It's also
-# customary to leave one space after the ':'.
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct. It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
|-----handy-ruler------------------------------------------------------|
ImageJ: ImageJ (Image processing and analysis in Java)