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-rw-r--r--academic/arpack-ng/README10
-rw-r--r--academic/arpack-ng/arpack-ng.SlackBuild33
-rw-r--r--academic/arpack-ng/patches/ax_blas.m4238
3 files changed, 264 insertions, 17 deletions
diff --git a/academic/arpack-ng/README b/academic/arpack-ng/README
index b452bc3756..8c72ec2f8e 100644
--- a/academic/arpack-ng/README
+++ b/academic/arpack-ng/README
@@ -3,3 +3,13 @@ large scale eigenvalue problems.
This is a fork of ARPACK that is actively maintained. As such, this
package will conflict with the ARPACK package. Do not install both.
+
+This requires a BLAS/LAPACK implementation. Choose one of these package sets:
+* OpenBLAS (includes a LAPACK implementation)
+* atlas, lapack-atlas
+* blas, lapack (the Netlib reference implementations)
+If more than one set is installed (assuming there are no packaging conflicts)
+then the auto-detection will use the first implementation from this list that
+it finds. If in doubt, choose the Netlib reference implementations; other
+packages that require a BLAS or LAPACK implementation may not build if they
+are not configured to detect/use alternate implementations.
diff --git a/academic/arpack-ng/arpack-ng.SlackBuild b/academic/arpack-ng/arpack-ng.SlackBuild
index aa367227fc..7f20aef99c 100644
--- a/academic/arpack-ng/arpack-ng.SlackBuild
+++ b/academic/arpack-ng/arpack-ng.SlackBuild
@@ -9,22 +9,22 @@
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
-# notice, this list of conditions and the following disclaimer.
+# notice, this list of conditions and the following disclaimer.
#
-# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
-# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=arpack-ng
VERSION=${VERSION:-3.1.4}
-BUILD=${BUILD:-1}
+BUILD=${BUILD:-2}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
@@ -65,11 +65,10 @@ rm -rf $PRGNAM-$VERSION
tar xvf $CWD/$PRGNAM\_$VERSION.tar.gz
cd $PRGNAM-$VERSION
chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
- -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+chmod -R u+w,go-w,a+rX-st .
+
+# Auto-detect OpenBLAS.
+cat $CWD/patches/ax_blas.m4 > m4/ax_blas.m4
# Do not install test binaries.
# http://forge.scilab.org/index.php/p/arpack-ng/issues/1348/
diff --git a/academic/arpack-ng/patches/ax_blas.m4 b/academic/arpack-ng/patches/ax_blas.m4
new file mode 100644
index 0000000000..821459d857
--- /dev/null
+++ b/academic/arpack-ng/patches/ax_blas.m4
@@ -0,0 +1,238 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_blas.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
+#
+# DESCRIPTION
+#
+# This macro looks for a library that implements the BLAS linear-algebra
+# interface (see http://www.netlib.org/blas/). On success, it sets the
+# BLAS_LIBS output variable to hold the requisite library linkages.
+#
+# To link with BLAS, you should link with:
+#
+# $BLAS_LIBS $LIBS $FLIBS
+#
+# in that order. FLIBS is the output variable of the
+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
+# sometimes necessary in order to link with F77 libraries. Users will also
+# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
+# reason.
+#
+# Many libraries are searched for, from ATLAS to CXML to ESSL. The user
+# may also use --with-blas=<lib> in order to use some specific BLAS
+# library <lib>. In order to link successfully, however, be aware that you
+# will probably need to use the same Fortran compiler (which can be set
+# via the F77 env. var.) as was used to compile the BLAS library.
+#
+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
+# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
+# not found. If ACTION-IF-FOUND is not specified, the default action will
+# define HAVE_BLAS.
+#
+# LICENSE
+#
+# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+#serial 14
+
+AU_ALIAS([ACX_BLAS], [AX_BLAS])
+AC_DEFUN([AX_BLAS], [
+AC_PREREQ(2.50)
+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
+AC_REQUIRE([AC_CANONICAL_HOST])
+ax_blas_ok=no
+
+AC_ARG_WITH(blas,
+ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
+case $with_blas in
+ yes | "") ;;
+ no) ax_blas_ok=disable ;;
+ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
+ *) BLAS_LIBS="-l$with_blas" ;;
+esac
+
+# Get fortran linker names of BLAS functions to check for.
+AC_F77_FUNC(sgemm)
+AC_F77_FUNC(dgemm)
+
+ax_blas_save_LIBS="$LIBS"
+LIBS="$LIBS $FLIBS"
+
+# First, check BLAS_LIBS environment variable
+if test $ax_blas_ok = no; then
+if test "x$BLAS_LIBS" != x; then
+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+fi
+
+# BLAS linked to by default? (happens on some supercomputers)
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="$LIBS"
+ AC_MSG_CHECKING([if $sgemm is being linked in already])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+
+# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
+ BLAS_LIBS="-lopenblas"])
+fi
+
+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(atlas, ATL_xerbla,
+ [AC_CHECK_LIB(f77blas, $sgemm,
+ [AC_CHECK_LIB(cblas, cblas_dgemm,
+ [ax_blas_ok=yes
+ BLAS_LIBS="-lcblas -lf77blas -latlas"],
+ [], [-lf77blas -latlas])],
+ [], [-latlas])])
+fi
+
+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm,
+ [AC_CHECK_LIB(dgemm, $dgemm,
+ [AC_CHECK_LIB(sgemm, $sgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
+ [], [-lblas])],
+ [], [-lblas])])
+fi
+
+# BLAS in Intel MKL library?
+if test $ax_blas_ok = no; then
+ # MKL for gfortran
+ if test x"$ac_cv_fc_compiler_gnu" = xyes; then
+ # 64 bit
+ if test $host_cpu = x86_64; then
+ AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
+ # 32 bit
+ elif test $host_cpu = i686; then
+ AC_CHECK_LIB(mkl_gf, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
+ fi
+ # MKL for other compilers (Intel, PGI, ...?)
+ else
+ # 64-bit
+ if test $host_cpu = x86_64; then
+ AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
+ # 32-bit
+ elif test $host_cpu = i686; then
+ AC_CHECK_LIB(mkl_intel, $sgemm,
+ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
+ [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
+ fi
+ fi
+fi
+# Old versions of MKL
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
+fi
+
+# BLAS in Apple vecLib library?
+if test $ax_blas_ok = no; then
+ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
+ AC_MSG_CHECKING([for $sgemm in -framework vecLib])
+ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
+ AC_MSG_RESULT($ax_blas_ok)
+ LIBS="$save_LIBS"
+fi
+
+# BLAS in Alpha CXML library?
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
+fi
+
+# BLAS in Alpha DXML library? (now called CXML, see above)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
+fi
+
+# BLAS in Sun Performance library?
+if test $ax_blas_ok = no; then
+ if test "x$GCC" != xyes; then # only works with Sun CC
+ AC_CHECK_LIB(sunmath, acosp,
+ [AC_CHECK_LIB(sunperf, $sgemm,
+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
+ ax_blas_ok=yes],[],[-lsunmath])])
+ fi
+fi
+
+# BLAS in SCSL library? (SGI/Cray Scientific Library)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
+fi
+
+# BLAS in SGIMATH library?
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(complib.sgimath, $sgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
+fi
+
+# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm,
+ [AC_CHECK_LIB(essl, $sgemm,
+ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
+ [], [-lblas $FLIBS])])
+fi
+
+# Generic BLAS library?
+if test $ax_blas_ok = no; then
+ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
+fi
+
+AC_SUBST(BLAS_LIBS)
+
+LIBS="$ax_blas_save_LIBS"
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+if test x"$ax_blas_ok" = xyes; then
+ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
+ :
+else
+ ax_blas_ok=no
+ $2
+fi
+])dnl AX_BLAS
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