diff options
| -rw-r--r-- | academic/copasi/README | 8 | ||||
| -rw-r--r-- | academic/copasi/copasi.SlackBuild | 19 | ||||
| -rw-r--r-- | academic/copasi/copasi.info | 10 |
3 files changed, 18 insertions, 19 deletions
diff --git a/academic/copasi/README b/academic/copasi/README index e32cb06d9c..d8e33bc6bc 100644 --- a/academic/copasi/README +++ b/academic/copasi/README @@ -1,4 +1,4 @@ -COPASI is a package for modeling and simulation of biochemical networks, +COPASI is a package for modeling and simulation of biochemical networks, popular in the field of systems biology. COPASI is a stand-alone program that simulates models of biochemical @@ -11,6 +11,6 @@ animations of network diagrams. COPASI's GUI is based on QT, but a command line version is also included that allows for processing computations in batch mode. -COPASI is a collaboration between research groups at the Virginia -Bioinformatics Institute, University of Heidelberg, University of -Manchester and previously in the EML-Research. +COPASI is a collaboration between research groups at the Biocomplexity +Institute at Virginia Tech, University of Heidelberg, University of +Connecticut, University of Manchester, and previously the EML-Research. diff --git a/academic/copasi/copasi.SlackBuild b/academic/copasi/copasi.SlackBuild index c8d7c71843..58752ab156 100644 --- a/academic/copasi/copasi.SlackBuild +++ b/academic/copasi/copasi.SlackBuild @@ -23,12 +23,12 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=copasi -VERSION=${VERSION:-4.16.104} +VERSION=${VERSION:-4.17.135} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} case "$(uname -m)" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$(uname -m) ;; esac @@ -38,12 +38,12 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then +if [ "$ARCH" = "i586" ]; then BINNAME="Linux-32bit" elif [ "$ARCH" = "x86_64" ]; then BINNAME="Linux-64bit" else - echo "$ARCH is not supported by the $PRGNAM build script..." + echo "$ARCH is not supported by the $PRGNAM build script." exit 1 fi @@ -55,16 +55,15 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf $PRGNAM-$VERSION +rm -rf COPASI-$VERSION-$BINNAME tar xvf $CWD/COPASI-$VERSION-$BINNAME.tar.gz -mv COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION -cd $PRGNAM-$VERSION +cd COPASI-$VERSION-$BINNAME chown -R root:root . find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications} cp -a bin/* $PKG/usr/bin/ diff --git a/academic/copasi/copasi.info b/academic/copasi/copasi.info index a7ae0162e4..a16000eb04 100644 --- a/academic/copasi/copasi.info +++ b/academic/copasi/copasi.info @@ -1,10 +1,10 @@ PRGNAM="copasi" -VERSION="4.16.104" +VERSION="4.17.135" HOMEPAGE="http://www.copasi.org" -DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-104/COPASI-4.16.104-Linux-32bit.tar.gz" -MD5SUM="0aba3e72f8c245d306926f271b998da8" -DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-104/COPASI-4.16.104-Linux-64bit.tar.gz" -MD5SUM_x86_64="8525a65d620bafa5da3045fbf12ba6b5" +DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-32bit.tar.gz" +MD5SUM="d3d03eb1e4b24613d930b9b2adec5ee7" +DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-64bit.tar.gz" +MD5SUM_x86_64="af6285199dcf877ad3450333c2b93201" REQUIRES="" MAINTAINER="Pedro Mendes" EMAIL="pedro@gepasi.org" |