diff options
| -rw-r--r-- | academic/clustalo/README | 6 | ||||
| -rw-r--r-- | academic/clustalo/clustalo.SlackBuild | 14 | ||||
| -rw-r--r-- | academic/clustalo/clustalo.info | 8 |
3 files changed, 16 insertions, 12 deletions
diff --git a/academic/clustalo/README b/academic/clustalo/README index 15af464b48..f7a9064157 100644 --- a/academic/clustalo/README +++ b/academic/clustalo/README @@ -5,8 +5,10 @@ allowing hundreds of thousands of sequences to be aligned in only a few hours. In addition, the quality of alignments is superior to previous versions, as measured by a range of popular benchmarks. -Clustal Omega is currently a command line-only tool, and is only -suitable for aligning protein sequences, not DNA or RNA. +Clustal Omega is currently a command line-only tool, but the following +independent programs provide an easy to use GUI: +- seaview +- ugene If you like Clustal-Omega please cite: diff --git a/academic/clustalo/clustalo.SlackBuild b/academic/clustalo/clustalo.SlackBuild index 4a50ef8ab4..3ed997060f 100644 --- a/academic/clustalo/clustalo.SlackBuild +++ b/academic/clustalo/clustalo.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for clustalo -# Copyright 2011-2013 Petar Petrov, ppetrov@paju.oulu.fi +# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=clustalo -VERSION=${VERSION:-1.2.0} +VERSION=${VERSION:-1.2.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -66,13 +66,15 @@ tar xvf $CWD/$SRCNAM-$VERSION.tar.gz cd $SRCNAM-$VERSION chown -R root:root . find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ - -exec chmod 644 {} \; + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ +AM_CFLAGS="$SLKCFLAGS" \ +AM_CXXFLAGS="$SLKCFLAGS" \ ./configure \ --prefix=/usr \ --libdir=/usr/lib${LIBDIRSUFFIX} \ diff --git a/academic/clustalo/clustalo.info b/academic/clustalo/clustalo.info index eddaff6e5b..e43a00d763 100644 --- a/academic/clustalo/clustalo.info +++ b/academic/clustalo/clustalo.info @@ -1,10 +1,10 @@ PRGNAM="clustalo" -VERSION="1.2.0" +VERSION="1.2.1" HOMEPAGE="http://www.clustal.org/omega/" -DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.0.tar.gz" -MD5SUM="23d03e5512c86f7175a148930e210fab" +DOWNLOAD="http://www.clustal.org/omega/clustal-omega-1.2.1.tar.gz" +MD5SUM="7ea360ef0c615d3a07c872e2345df3e1" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="argtable" MAINTAINER="Petar Petrov" -EMAIL="ppetrov@paju.oulu.fi" +EMAIL="petar.petrov@student.oulu.fi" |