academic/rbio: Renamed and moved from libraries.

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

5 files changed, 0 insertions, 386 deletions

diff --git a/libraries/RBio/RBio.SlackBuild b/libraries/RBio/RBio.SlackBuild
deleted file mode 100644
index bfb5041fbc..0000000000
--- a/libraries/RBio/RBio.SlackBuild
+++ /dev/null
@@ -1,106 +0,0 @@
-#!/bin/sh
-
-# Slackware build script for RBio
-
-# Copyright 2013 Kyle Guinn <elyk03@gmail.com>, USA
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-# notice, this list of conditions and the following disclaimer.
-#
-# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
-# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-PRGNAM=RBio
-VERSION=${VERSION:-2.1.1}
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-
-if [ -z "$ARCH" ]; then
-  case "$(uname -m)" in
-    i?86) ARCH=i486 ;;
-    arm*) ARCH=arm ;;
-       *) ARCH=$(uname -m) ;;
-  esac
-fi
-
-CWD=$(pwd)
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-DOCS="README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt"
-
-if [ "$ARCH" = "i486" ]; then
-  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "i686" ]; then
-  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
-  LIBDIRSUFFIX=""
-elif [ "$ARCH" = "x86_64" ]; then
-  SLKCFLAGS="-O2 -fPIC"
-  LIBDIRSUFFIX="64"
-else
-  SLKCFLAGS="-O2"
-  LIBDIRSUFFIX=""
-fi
-
-# Recommended by SuiteSparse
-SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE"
-
-set -e
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $PRGNAM
-tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
-cd $PRGNAM
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-patch -p1 < $CWD/autotoolize.diff
-autoreconf -vif
-
-CFLAGS="$SLKCFLAGS" \
-./configure \
-  --prefix=/usr \
-  --libdir=/usr/lib${LIBDIRSUFFIX} \
-  --sysconfdir=/etc \
-  --localstatedir=/var \
-  --mandir=/usr/man \
-  --infodir=/usr/info \
-  --docdir=/usr/doc/$PRGNAM-$VERSION \
-  --enable-shared \
-  --disable-static \
-  --disable-dependency-tracking \
-  --build=$ARCH-slackware-linux
-
-make
-make check
-make install-strip DESTDIR=$PKG
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/libraries/RBio/RBio.info b/libraries/RBio/RBio.info
deleted file mode 100644
index 81bb77ba3e..0000000000
--- a/libraries/RBio/RBio.info
+++ /dev/null
@@ -1,10 +0,0 @@
-PRGNAM="RBio"
-VERSION="2.1.1"
-HOMEPAGE="https://www.cise.ufl.edu/research/sparse/RBio/"
-DOWNLOAD="https://www.cise.ufl.edu/research/sparse/RBio/RBio-2.1.1.tar.gz"
-MD5SUM="07495e73e29683a8b348811a34e0e396"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
-REQUIRES="SuiteSparse_config"
-MAINTAINER="Kyle Guinn"
-EMAIL="elyk03@gmail.com"
diff --git a/libraries/RBio/README b/libraries/RBio/README
deleted file mode 100644
index c30b708df3..0000000000
--- a/libraries/RBio/README
+++ /dev/null
@@ -1,5 +0,0 @@
-RBio - MATLAB toolbox for reading/writing sparse matrices in the
-Rutherford/Boeing format, and for reading/writing problems in the UF
-Sparse Matrix Collection from/to a set of files in a directory.
-
-This package is part of SuiteSparse.
diff --git a/libraries/RBio/autotoolize.diff b/libraries/RBio/autotoolize.diff
deleted file mode 100644
index 4c495922ee..0000000000
--- a/libraries/RBio/autotoolize.diff
+++ /dev/null
@@ -1,246 +0,0 @@
-diff --git a/Demo/Makefile.am b/Demo/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/Demo/Makefile.am
-@@ -0,0 +1,22 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
-+LDADD = $(top_builddir)/Source/librbio.la $(SUITESPARSECONFIG_LIBS)
-+
-+EXTRA_DIST = \
-+	RBdemo.out
-+
-+# Disable the .out implicit pattern rule.  Prevents GNU make from
-+# adding bogus dependencies for the .out files listed above.
-+%.out: %
-+
-+check_PROGRAMS = \
-+	RBdemo
-+
-+RBdemo_SOURCES = RBdemo.c
-+
-+RB = \
-+	$(top_srcdir)/RBio/private/west0479.rua
-+
-+check-local: $(check_PROGRAMS) $(RB)
-+	./RBdemo < $(top_srcdir)/RBio/private/west0479.rua
-+
-+CLEANFILES = temp.rb
-diff --git a/Include/Makefile.am b/Include/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/Include/Makefile.am
-@@ -0,0 +1 @@
-+pkginclude_HEADERS = RBio.h
-diff --git a/Makefile.am b/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/Makefile.am
-@@ -0,0 +1,5 @@
-+SUBDIRS = Include Source RBio Demo Tcov
-+EXTRA_DIST = README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt
-+
-+pkgconfigdir = $(libdir)/pkgconfig
-+pkgconfig_DATA = rbio.pc
-diff --git a/RBio/Makefile.am b/RBio/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/RBio/Makefile.am
-@@ -0,0 +1,3 @@
-+SUBDIRS = private
-+dist_noinst_DATA = \
-+	mywest
-diff --git a/RBio/private/Makefile.am b/RBio/private/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/RBio/private/Makefile.am
-@@ -0,0 +1,7 @@
-+dist_noinst_DATA = \
-+	bcsstk01.rb \
-+	farm.rb \
-+	lap_25.pse \
-+	lap_25.rb \
-+	west0479.rb \
-+	west0479.rua
-diff --git a/Source/Makefile.am b/Source/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/Source/Makefile.am
-@@ -0,0 +1,18 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
-+
-+RBIOSRC = \
-+	RBio.c
-+
-+lib_LTLIBRARIES = librbio.la
-+noinst_LTLIBRARIES = librbioi.la librbiol.la
-+
-+librbioi_la_SOURCES = $(RBIOSRC)
-+librbioi_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
-+librbioi_la_CPPFLAGS = $(AM_CPPFLAGS) -DINT
-+
-+librbiol_la_SOURCES = $(RBIOSRC)
-+librbiol_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
-+
-+librbio_la_SOURCES =
-+librbio_la_LIBADD = librbioi.la librbiol.la
-+librbio_la_LDFLAGS = -no-undefined -version-number 2:1:1
-diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am
-new file mode 100644
---- /dev/null
-+++ b/Tcov/Makefile.am
-@@ -0,0 +1,92 @@
-+AM_CC = gcc
-+AM_CFLAGS = -O0 -g --coverage
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
-+LDADD = $(SUITESPARSECONFIG_LIBS)
-+
-+dist_noinst_DATA = \
-+	matrices/Tina_DisCog.tar.gz \
-+	matrices/dwg961a.tar.gz \
-+	matrices/m4.rb \
-+	matrices/m4b.rb \
-+	matrices/mhd1280a.tar.gz \
-+	matrices/mhd1280b.tar.gz \
-+	matrices/plskz362.tar.gz \
-+	matrices/qc324.tar.gz \
-+	matrices/s4.rb \
-+	matrices/west0067.tar.gz \
-+	mangled/1.rb \
-+	mangled/2.rb \
-+	mangled/3.rb \
-+	mangled/4.rb \
-+	mangled/5.rb \
-+	mangled/6.rb \
-+	mangled/7.rb \
-+	mangled/8.rb \
-+	mangled/9.rb \
-+	mangled/10.rb \
-+	mangled/11.rb \
-+	mangled/12.rb \
-+	mangled/13.rb \
-+	mangled/14.rb \
-+	mangled/15.rb
-+
-+check_PROGRAMS = \
-+	RBdemo \
-+	RBtest
-+
-+RBdemo_SOURCES = $(top_srcdir)/Source/RBio.c $(top_srcdir)/Demo/RBdemo.c
-+RBtest_SOURCES = $(top_srcdir)/Source/RBio.c RBtest.c
-+
-+TAR = tar -O -xvvzf
-+
-+RB = \
-+	$(top_srcdir)/RBio/private/bcsstk01.rb \
-+	$(top_srcdir)/RBio/private/farm.rb \
-+	$(top_srcdir)/RBio/private/lap_25.pse \
-+	$(top_srcdir)/RBio/private/lap_25.rb \
-+	$(top_srcdir)/RBio/private/west0479.rb \
-+	$(top_srcdir)/RBio/private/west0479.rua \
-+	$(addprefix $(srcdir)/,$(dist_noinst_DATA))
-+
-+COV = \
-+	$(top_srcdir)/Source/RBio.c \
-+	$(top_srcdir)/Demo/RBdemo.c \
-+	$(srcdir)/RBtest.c
-+
-+check-local: $(check_PROGRAMS) $(RB) $(COV)
-+	-./RBdemo $(top_srcdir)/RBio/private/bcsstk01.rb
-+	-./RBdemo $(top_srcdir)/RBio/private/farm.rb
-+	-./RBdemo $(top_srcdir)/RBio/private/lap_25.pse
-+	-./RBdemo $(top_srcdir)/RBio/private/lap_25.rb
-+	-./RBdemo $(top_srcdir)/RBio/private/west0479.rb
-+	-./RBdemo $(top_srcdir)/RBio/private/west0479.rua
-+	-$(TAR) $(srcdir)/matrices/dwg961a.tar.gz  dwg961a/dwg961a.rb     | ./RBdemo
-+	-$(TAR) $(srcdir)/matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb   | ./RBdemo
-+	-$(TAR) $(srcdir)/matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb   | ./RBdemo
-+	-$(TAR) $(srcdir)/matrices/qc324.tar.gz    qc324/qc324.rb         | ./RBdemo
-+	-$(TAR) $(srcdir)/matrices/plskz362.tar.gz plskz362/plskz362.rb   | ./RBdemo
-+	-$(TAR) $(srcdir)/matrices/west0067.tar.gz west0067/west0067.rb   | ./RBdemo
-+	-$(TAR) $(srcdir)/matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo
-+	-./RBdemo $(srcdir)/matrices/m4.rb
-+	-./RBdemo $(srcdir)/matrices/s4.rb
-+	-./RBdemo $(srcdir)/matrices/m4b.rb
-+	-./RBdemo $(srcdir)/mangled/1.rb
-+	-./RBdemo $(srcdir)/mangled/2.rb
-+	-./RBdemo $(srcdir)/mangled/3.rb
-+	-./RBdemo $(srcdir)/mangled/4.rb
-+	-./RBdemo $(srcdir)/mangled/5.rb
-+	-./RBdemo $(srcdir)/mangled/6.rb
-+	-./RBdemo $(srcdir)/mangled/7.rb
-+	-./RBdemo $(srcdir)/mangled/8.rb
-+	-./RBdemo $(srcdir)/mangled/9.rb
-+	-./RBdemo $(srcdir)/mangled/10.rb
-+	-./RBdemo $(srcdir)/mangled/11.rb
-+	-./RBdemo $(srcdir)/mangled/12.rb
-+	-./RBdemo $(srcdir)/mangled/13.rb
-+	-./RBdemo $(srcdir)/mangled/14.rb
-+	-./RBdemo $(srcdir)/mangled/15.rb
-+	-./RBtest
-+	-gcov -o $(builddir) $(COV) > gcov.out
-+	-grep -c "#####" RBio.c.gcov
-+
-+CLEANFILES = gcov.out *.gcov *.gcda *.gcno temp*.rb
-diff --git a/configure.ac b/configure.ac
-new file mode 100644
---- /dev/null
-+++ b/configure.ac
-@@ -0,0 +1,41 @@
-+#                                               -*- Autoconf -*-
-+# Process this file with autoconf to produce a configure script.
-+
-+AC_PREREQ([2.69])
-+AC_INIT([RBio],[2.1.1],[DrTimothyAldenDavis@gmail.com],[rbio],[http://www.suitesparse.com/])
-+AC_CONFIG_SRCDIR([Source/RBio.c])
-+AC_CONFIG_HEADERS([config.h])
-+AM_INIT_AUTOMAKE([foreign])
-+LT_INIT
-+
-+# Checks for programs.
-+AC_PROG_INSTALL
-+AC_PROG_CC
-+
-+LIBS_SAVED=$LIBS
-+
-+# Checks for libraries.
-+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
-+	[],
-+	[AC_MSG_ERROR([cannot find suitesparseconfig])])
-+
-+# Checks for header files.
-+AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
-+
-+# Checks for typedefs, structures, and compiler characteristics.
-+
-+# Checks for library functions.
-+
-+LIBS=$LIBS_SAVED
-+
-+AC_CONFIG_FILES([
-+	rbio.pc
-+	Makefile
-+	Demo/Makefile
-+	Include/Makefile
-+	RBio/Makefile
-+	RBio/private/Makefile
-+	Source/Makefile
-+	Tcov/Makefile])
-+AC_OUTPUT
-diff --git a/rbio.pc.in b/rbio.pc.in
-new file mode 100644
---- /dev/null
-+++ b/rbio.pc.in
-@@ -0,0 +1,12 @@
-+prefix=@prefix@
-+exec_prefix=@exec_prefix@
-+libdir=@libdir@
-+includedir=@includedir@
-+
-+Name: @PACKAGE_NAME@
-+Description: Toolbox for reading/writing sparse matrices in Rutherford/Boeing format
-+Version: @PACKAGE_VERSION@
-+URL: @PACKAGE_URL@
-+Requires.private: suitesparseconfig
-+Libs: -L${libdir} -lrbio
-+Cflags: -I${includedir}/rbio
diff --git a/libraries/RBio/slack-desc b/libraries/RBio/slack-desc
deleted file mode 100644
index 0c06ea984c..0000000000
--- a/libraries/RBio/slack-desc
+++ /dev/null
@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct.  It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
-    |-----handy-ruler------------------------------------------------------|
-RBio: RBio (sparse matrix I/O routines)
-RBio:
-RBio: RBio - MATLAB toolbox for reading/writing sparse matrices in the
-RBio: Rutherford/Boeing format, and for reading/writing problems in the
-RBio: UF Sparse Matrix Collection from/to a set of files in a directory.
-RBio:
-RBio:
-RBio:
-RBio:
-RBio:
-RBio: