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authorPetar Petrov <ppetrov@paju.oulu.fi>2012-12-14 18:50:19 +0100
committerMatteo Bernardini <ponce@slackbuilds.org>2012-12-15 15:13:38 +0100
commit0b841ae33af4b3b96d30cfabb56998f588aa9e8f (patch)
tree8e7ad5acb8306cef5e555b23b9276f7ecf38e4a1 /academic
parent486b19495c15a5eaf95d129a1e2e7070278c61d9 (diff)
downloadslackbuilds-0b841ae33af4b3b96d30cfabb56998f588aa9e8f.tar.gz
academic/seaview: Updated for version 4.4.0.
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/seaview/README16
-rw-r--r--academic/seaview/seaview.SlackBuild2
-rw-r--r--academic/seaview/seaview.info8
3 files changed, 14 insertions, 12 deletions
diff --git a/academic/seaview/README b/academic/seaview/README
index 24e334c55f..c73aa1a016 100644
--- a/academic/seaview/README
+++ b/academic/seaview/README
@@ -1,13 +1,13 @@
SeaView is a multiplatform, graphical user interface for multiple
sequence alignment and molecular phylogeny. Important features are:
-1) SeaView reads and writes various file formats (NEXUS, MSF,
- CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences
- and of phylogenetic trees.
+1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL,
+ FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of
+ phylogenetic trees.
-2) SeaView drives programs muscle or clustalw for multiple sequence
- alignment, and also allows to use any external alignment algorithm
- able to read and write FASTA-formatted files.
+2) SeaView drives programs muscle or Clustal Omega (clustalo) for
+ multiple sequence alignment, and also allows to use any external
+ alignment algorithm able to read and write FASTA-formatted files.
3) Seaview drives the Gblocks program to select blocks of
evolutionarily conserved sites.
@@ -18,7 +18,9 @@ sequence alignment and molecular phylogeny. Important features are:
evolutionary distances,
c) maximum likelihood, driving program PhyML 3.0.
-5) SeaView draws phylogenetic trees on screen, PDF or PostScript files
+5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
+ PostScript files.
+
6) SeaView allows to download sequences from EMBL/GenBank/UniProt
using the Internet.
diff --git a/academic/seaview/seaview.SlackBuild b/academic/seaview/seaview.SlackBuild
index b8ca7fd7c1..1f5a552a24 100644
--- a/academic/seaview/seaview.SlackBuild
+++ b/academic/seaview/seaview.SlackBuild
@@ -25,7 +25,7 @@
# Thanks to Niels Horn for correcting the CFLAGS.
PRGNAM=seaview
-VERSION=${VERSION:-4.3.5}
+VERSION=${VERSION:-4.4.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
diff --git a/academic/seaview/seaview.info b/academic/seaview/seaview.info
index 06390bdfbc..4c22b72414 100644
--- a/academic/seaview/seaview.info
+++ b/academic/seaview/seaview.info
@@ -1,10 +1,10 @@
PRGNAM="seaview"
-VERSION="4.3.5"
+VERSION="4.4.0"
HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
-DOWNLOAD="http://pbil.univ-lyon1.fr/software/seaview_data/archive/seaview_4.3.5.tar.gz"
-MD5SUM="5dd45cf8e1fa9a6179aae82215b2b0bb"
+DOWNLOAD="http://pbil.univ-lyon1.fr/software/seaview_data/archive/seaview_4.4.0.tar.gz"
+MD5SUM="c304054697b6025d323af328bb29938a"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
-REQUIRES="Gblocks PhyML clustalw fltk13 muscle"
+REQUIRES="Gblocks PhyML clustalo fltk13 muscle"
MAINTAINER="Petar Petrov"
EMAIL="ppetrov@paju.oulu.fi"