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| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2013-12-14 09:53:09 +0700 |
|---|---|---|
| committer | Erik Hanson <erik@slackbuilds.org> | 2013-12-14 10:53:06 -0600 |
| commit | d9759a11f4ba4278ed86def466dfc199a5207b95 (patch) | |
| tree | 0d424888f8a0cdb9c334f66a3c1fa4676614dde4 /academic/tophat/References | |
| parent | b7e03e6316cecca89c5f0444ade92faeb5320ede (diff) | |
| download | slackbuilds-d9759a11f4ba4278ed86def466dfc199a5207b95.tar.gz | |
academic/tophat: Added (Splice junction mapper for RNA-Seq reads).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/tophat/References')
| -rw-r--r-- | academic/tophat/References | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/academic/tophat/References b/academic/tophat/References new file mode 100644 index 0000000000..0e7deda7d1 --- /dev/null +++ b/academic/tophat/References @@ -0,0 +1,13 @@ +Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice +junctions with RNA-Seq. Bioinformatics doi:10.1093/bioinformatics/btp120 + +Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory- +efficient alignment of short DNA sequences to the human genome. Genome +Biology 10:R25. + +Kim D and Salzberg SL. TopHat-Fusion: an algorithm for discovery of +novel fusion transcripts. Genome Biology 2011, 12:R72 + +Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. +TopHat2: accurate alignment of transcriptomes in the presence of +insertions, deletions and gene fusions. . Genome Biology 2011, 14:R36 |