academic/topdraw: Added (A sketchpad for protein topology diagrams).

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

8 files changed, 123 insertions, 0 deletions

diff --git a/academic/topdraw/README b/academic/topdraw/README
new file mode 100644
index 0000000000..c16c5424e6
--- /dev/null
+++ b/academic/topdraw/README
@@ -0,0 +1,17 @@
+TopDraw is a sketchpad for drawing topology cartoons of proteins
+written in Tcl/Tk. It does not calculate topology from a PDB file, but
+merely allows you to sketch a topology derived from another source.
+
+Features:
+- Easy sketching of protein topologies
+- Save/Open function for reusing/editing previous drawings
+- Postscript output for printing/publication
+- Horizontal or vertical helices and strands
+- New version allows diagonal connections
+
+Note: The source is not versioned, so a MD5SUM missmatch is expected
+when upstream released a new version.
+
+Reference:
+TopDraw: a sketchpad for protein structure topology cartoons. Bond CS.
+Bioinformatics. 2003 Jan 22;19(2):311-2.
diff --git a/academic/topdraw/References b/academic/topdraw/References
new file mode 100644
index 0000000000..cc4e429cf5
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+++ b/academic/topdraw/References
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+Reference:
+TopDraw: a sketchpad for protein structure topology cartoons. Bond CS.
+Bioinformatics. 2003 Jan 22;19(2):311-2.
diff --git a/academic/topdraw/doinst.sh b/academic/topdraw/doinst.sh
new file mode 100644
index 0000000000..5fb28930db
--- /dev/null
+++ b/academic/topdraw/doinst.sh
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+if [ -x /usr/bin/update-desktop-database ]; then
+  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
+fi
diff --git a/academic/topdraw/slack-desc b/academic/topdraw/slack-desc
new file mode 100644
index 0000000000..eba5c1a4e1
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+++ b/academic/topdraw/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.
+# Line up the first '|' above the ':' following the base package name, and
+# the '|' on the right side marks the last column you can put a character in.
+# You must make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':' except on otherwise blank lines.
+
+       |-----handy-ruler------------------------------------------------------|
+topdraw: topdraw (A sketchpad for protein topology diagrams)
+topdraw:
+topdraw: TopDraw is a sketchpad for drawing topology cartoons of proteins
+topdraw: written in Tcl/Tk. It does not calculate topology from a PDB file,
+topdraw: merely allows you to sketch a topology derived from another source.
+topdraw:
+topdraw: Home: http://crystal.scb.uwa.edu.au/charlie/software/topdraw/
+topdraw: References: /usr/doc/topdraw-sep2002/References
+topdraw:
+topdraw:
+topdraw:
diff --git a/academic/topdraw/topdraw.SlackBuild b/academic/topdraw/topdraw.SlackBuild
new file mode 100644
index 0000000000..4a74c94c84
--- /dev/null
+++ b/academic/topdraw/topdraw.SlackBuild
@@ -0,0 +1,63 @@
+#!/bin/sh
+
+# Slackware build script for topdraw
+
+# Copyright 2013  Petar Petrov, petar.petrov@student.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+PRGNAM=topdraw
+VERSION=${VERSION:-sep2002}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+ARCH=noarch
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+mkdir $PRGNAM-$VERSION
+cd $PRGNAM-$VERSION
+unzip $CWD/$PRGNAM.zip
+
+install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+# Couldn't find an icon, so I assembled this thing from the program's menu...
+mkdir -p $PKG/usr/share/{applications,pixmaps}
+cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
+cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/topdraw/topdraw.desktop b/academic/topdraw/topdraw.desktop
new file mode 100644
index 0000000000..954d4aba81
--- /dev/null
+++ b/academic/topdraw/topdraw.desktop
@@ -0,0 +1,8 @@
+[Desktop Entry]
+Name=TopDraw
+Comment=A sketchpad for protein topology diagrams
+Exec=topdraw
+Icon=topdraw
+StartupNotify=false
+Type=Application
+Categories=Education;
diff --git a/academic/topdraw/topdraw.info b/academic/topdraw/topdraw.info
new file mode 100644
index 0000000000..0119d2ae53
--- /dev/null
+++ b/academic/topdraw/topdraw.info
@@ -0,0 +1,10 @@
+PRGNAM="topdraw"
+VERSION="sep2002"
+HOMEPAGE="http://crystal.scb.uwa.edu.au/charlie/software/topdraw/"
+DOWNLOAD="http://crystal.scb.uwa.edu.au/charlie/software/topdraw/topdraw.zip"
+MD5SUM="9827abf8ea33ea7f0811873661565925"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+REQUIRES=""
+MAINTAINER="Petar Petrov"
+EMAIL="petar.petrov@student.oulu.fi"
diff --git a/academic/topdraw/topdraw.png b/academic/topdraw/topdraw.png
new file mode 100644
index 0000000000..750f918930
--- /dev/null
+++ b/academic/topdraw/topdraw.png