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authorPetar Petrov <petar.petrov@student.oulu.fi>2015-03-27 07:58:54 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2015-03-27 07:58:54 +0700
commitc58570189ad9e3f5b13ae08737267c7d42aa2e1e (patch)
tree5d15106c11dc068533a3511bb10f0b9340f1fe63 /academic/seaview
parent25b5e0f23027f4b9bb01e66d742aa4ca3a9ca2e5 (diff)
downloadslackbuilds-c58570189ad9e3f5b13ae08737267c7d42aa2e1e.tar.gz
academic/seaview: Updated for version 4.5.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/seaview')
-rw-r--r--academic/seaview/seaview.SlackBuild17
-rw-r--r--academic/seaview/seaview.info6
-rw-r--r--academic/seaview/slack-desc2
3 files changed, 14 insertions, 11 deletions
diff --git a/academic/seaview/seaview.SlackBuild b/academic/seaview/seaview.SlackBuild
index 651cf2a4b3..de4b13147b 100644
--- a/academic/seaview/seaview.SlackBuild
+++ b/academic/seaview/seaview.SlackBuild
@@ -26,7 +26,7 @@
# Thanks to developer Dr. Manolo Gouy for all his help.
PRGNAM=seaview
-VERSION=${VERSION:-4.5.3.4}
+VERSION=${VERSION:-4.5.4}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -77,13 +77,16 @@ sed -i "/^CFLAGS/s/=/+=/" Makefile
# Enable PDF output. If you do not want it, comment out the next two
# lines. Then you do not need to install PDFlib-Lite.
-sed -i "7 c PDF_INC = /usr/include" Makefile
-sed -i "8 c PDF_LIB = /usr/lib${LIBDIRSUFFIX}" Makefile
+sed -i "8 c PDF_INC = /usr/include" Makefile
+sed -i "9 c PDF_LIB = /usr/lib${LIBDIRSUFFIX}" Makefile
+sed -i "s:#PDF_PS_FLAGS:PDF_PS_FLAGS:" Makefile
+sed -i "s:#LPDF:LPDF:" Makefile
# Point to fltk13 during compilation and make the produced executable
# aware of the libraries' custom location
-sed -i "11 c FLTK = /usr/include/fltk13" Makefile
-sed -i "15 c CONFIG = /usr/bin/fltk13-config" Makefile
+sed -i "16 c FLTK = /usr/include/fltk13" Makefile
+sed -i "18 c CONFIG = /usr/bin/fltk13-config" Makefile
+sed -i "s:#IFLTK:IFLTK:" Makefile
# Point to the correct documentation path and phyml executable name
sed -i "s:#HELPFILE:HELPFILE:" Makefile
@@ -94,8 +97,8 @@ CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
make
-install -D -m755 seaview $PKG/usr/bin/$PRGNAM
-install -D -m644 seaview.1 $PKG/usr/man/man1/$PRGNAM.1
+install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM
+install -D -m644 $PRGNAM.1 $PKG/usr/man/man1/$PRGNAM.1
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
diff --git a/academic/seaview/seaview.info b/academic/seaview/seaview.info
index 8e9eea96dc..a1b90cf5f9 100644
--- a/academic/seaview/seaview.info
+++ b/academic/seaview/seaview.info
@@ -1,8 +1,8 @@
PRGNAM="seaview"
-VERSION="4.5.3.4"
+VERSION="4.5.4"
HOMEPAGE="http://doua.prabi.fr/software/seaview"
-DOWNLOAD="http://doua.prabi.fr/software/seaview_data/archive/seaview_4.5.3.4.tar.gz"
-MD5SUM="a223849a96b698a6c60b77d2e2f1b877"
+DOWNLOAD="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz"
+MD5SUM="9c7797be6349bd5ad5dfa30297d3bd71"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="fltk13 PDFlib-Lite Gblocks PhyML clustalo muscle"
diff --git a/academic/seaview/slack-desc b/academic/seaview/slack-desc
index afcfcfc490..7cb99f5334 100644
--- a/academic/seaview/slack-desc
+++ b/academic/seaview/slack-desc
@@ -11,7 +11,7 @@ seaview:
seaview: SeaView is a multiplatform, graphical user interface for multiple
seaview: sequence alignment and molecular phylogeny.
seaview:
-seaview: References: /usr/doc/seaview-4.5.3.4/References
+seaview: References: /usr/doc/seaview-4.5.4/References
seaview: Home: http://pbil.univ-lyon1.fr/software/seaview.html
seaview:
seaview: