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authorRob van Nues <sborg63@disroot.org>2020-09-04 00:46:23 +0700
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2020-09-04 00:46:23 +0700
commitbe6670349055ce705f7a8f6289f323dc4ccee57f (patch)
treef7188ef7ce67c657574b0f61a8369ee55559032d /academic/pysam
parent14decd7670add708b0d033afc289a668f8df9caf (diff)
downloadslackbuilds-be6670349055ce705f7a8f6289f323dc4ccee57f.tar.gz
academic/pysam: Updated for version 0.16.0.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam')
-rw-r--r--academic/pysam/pysam.SlackBuild14
-rw-r--r--academic/pysam/pysam.info8
2 files changed, 11 insertions, 11 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild
index 1145e63733..48a8ef263f 100644
--- a/academic/pysam/pysam.SlackBuild
+++ b/academic/pysam/pysam.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for pysam
-# Copyright 2017 Rob van Nues
+# Copyright 2017-2020 Rob van Nues
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -24,8 +24,8 @@
PRGNAM=pysam
-VERSION=${VERSION:-0.15.4}
-BUILD=${BUILD:-2}
+VERSION=${VERSION:-0.16.0.1}
+BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
#set which python version to install it for
@@ -75,10 +75,10 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-###When pysam gets linked to htslib-1.10 this can be done again:
-##use system htslib instead:
-#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
-#export HTSLIB_INCLUDE_DIR=/usr/include
+### pysam now linked to htslib-1.10 so this can be done again:
+##use system htslib:
+export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
+export HTSLIB_INCLUDE_DIR=/usr/include
#the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook
chmod 644 pysam.egg-info/*
diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info
index 8e87762f0f..19fac12bab 100644
--- a/academic/pysam/pysam.info
+++ b/academic/pysam/pysam.info
@@ -1,10 +1,10 @@
PRGNAM="pysam"
-VERSION="0.15.4"
+VERSION="0.16.0.1"
HOMEPAGE="https://github.com/pysam-developers/pysam"
-DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.15.4.tar.gz"
-MD5SUM="fed157466d6e267e32593119c05247b2"
+DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.16.0.1.tar.gz"
+MD5SUM="5b4b73431f2511727f4fef43a67b392e"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
-REQUIRES="python3-Cython"
+REQUIRES="python3-Cython htslib"
MAINTAINER="Rob van Nues"
EMAIL="sborg63@disroot.org"