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authorPetar Petrov <slackalaxy@gmail.com>2016-06-05 15:48:31 +0300
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2016-06-05 22:27:59 +0700
commitaa95130ed566a71b012a1651e6dab1f368ed840e (patch)
tree02c06045b17ebbe6dc842f80dac6631b9abf0c31 /academic/pamlX
parente89ebdbb0c18202faea1c5edef3e3edf23d36a8c (diff)
downloadslackbuilds-aa95130ed566a71b012a1651e6dab1f368ed840e.tar.gz
academic/pamlX: Updated against paml 4.9a
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pamlX')
-rw-r--r--academic/pamlX/README10
-rw-r--r--academic/pamlX/pamlX.SlackBuild6
2 files changed, 12 insertions, 4 deletions
diff --git a/academic/pamlX/README b/academic/pamlX/README
index d2ab78a000..5d45d2518c 100644
--- a/academic/pamlX/README
+++ b/academic/pamlX/README
@@ -1 +1,9 @@
-The graphical user interface for paml.
+PAML: Phylogenetic Analysis by Maximum Likelihood
+
+PAML is a package of programs for phylogenetic analyses of DNA or
+protein sequences using maximum likelihood. PAML is not good for tree
+making. It may be used to estimate parameters and test hypotheses to
+study the evolutionary process, when you have reconstructed trees
+using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
+
+This is pamlX: the graphical user interface for PAML.
diff --git a/academic/pamlX/pamlX.SlackBuild b/academic/pamlX/pamlX.SlackBuild
index acf8840b42..cb80675a54 100644
--- a/academic/pamlX/pamlX.SlackBuild
+++ b/academic/pamlX/pamlX.SlackBuild
@@ -24,7 +24,7 @@
PRGNAM=pamlX
VERSION=${VERSION:-1.3.1}
-BUILD=${BUILD:-1}
+BUILD=${BUILD:-2}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
@@ -74,8 +74,8 @@ find -L . \
# manuals installed by paml.
sed -i 's|QApplication::applicationDirPath()|"/usr"|g' mainwindow.cpp
sed -i 's|+= "/pamlx.conf"|= "~/.pamlX/pamlx.conf"|g' mainwindow.cpp
-sed -i 's|/doc/|/doc/paml-4.8a/|g' mainwindow.cpp
-sed -i 's|/doc/|/doc/paml-4.8a/|g' pamlhistorydialog.cpp
+sed -i 's|/doc/|/doc/paml-4.9a/|g' mainwindow.cpp
+sed -i 's|/doc/|/doc/paml-4.9a/|g' pamlhistorydialog.cpp
# If you want the "Help" menu to use something else than Okular for
# viewing the PDF documentation, uncomment the appropriate line below