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authorPetar Petrov <ppetrov@paju.oulu.fi>2011-09-02 22:24:43 -0300
committerNiels Horn <niels.horn@slackbuilds.org>2011-09-02 22:24:43 -0300
commit9b575230bb7f6864447f8e785c137a1f1747b8c1 (patch)
tree3ad3295de60777aaeeacd1b83ceb239a0f219a4e /academic/muscle/muscle.SlackBuild
parent988aacfea16befd9738f72deb763a462beb1cdcd (diff)
downloadslackbuilds-9b575230bb7f6864447f8e785c137a1f1747b8c1.tar.gz
academic/muscle: Added (A multiple sequence alignments program)
Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>
Diffstat (limited to 'academic/muscle/muscle.SlackBuild')
-rw-r--r--academic/muscle/muscle.SlackBuild76
1 files changed, 76 insertions, 0 deletions
diff --git a/academic/muscle/muscle.SlackBuild b/academic/muscle/muscle.SlackBuild
new file mode 100644
index 0000000000..10d32e72bf
--- /dev/null
+++ b/academic/muscle/muscle.SlackBuild
@@ -0,0 +1,76 @@
+#!/bin/sh
+
+# Slackware build script for muscle
+# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
+# hereby submitted to the public domain
+
+# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
+# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
+# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+
+PRGNAM=muscle
+VERSION=${VERSION:-3.8.31}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+ case "$( uname -m )" in
+ i?86) ARCH=i486 ;;
+ arm*) ARCH=arm ;;
+ *) ARCH=$( uname -m ) ;;
+ esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i486" ]; then
+ SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+ LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+ SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+ LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+ SLKCFLAGS="-O2 -fPIC"
+ LIBDIRSUFFIX="64"
+else
+ SLKCFLAGS="-O2"
+ LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf ${PRGNAM}${VERSION}
+tar xvf $CWD/${PRGNAM}${VERSION}_src.tar.gz
+cd ${PRGNAM}${VERSION}
+chown -R root:root .
+find . \
+ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
+
+cd ./src
+
+ENV_GCC_OPTS="$SLKCFLAGS" \
+ make
+
+install -D -m755 muscle $PKG/usr/bin/muscle
+
+find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
+ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}