academic/megacc: Removed (see megax).

The new megax SlackBuild includes megacc.

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>

8 files changed, 0 insertions, 202 deletions

diff --git a/academic/megacc/README b/academic/megacc/README
deleted file mode 100644
index ccb0a7bdf6..0000000000
--- a/academic/megacc/README
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@@ -1,37 +0,0 @@
-MEGA: Molecular Evolutionary Genetics Analysis
-
-Sophisticated and user-friendly software suite for analyzing DNA and
-protein sequence data from species and populations.
-
-MEGA-CC is the command-line version of MEGA that implements its core
-analysis functions and is useful for iterative and automated execution.
-There are two executables: megacc and megaproto. Start with megaproto
-which is used to create a MEGA Analysis Options (.mao) file that
-specifies the analysis to run as well as relevant options. Then you call
-megacc from a command shell and pass the .mao filename and input data
-filenames as parameters. For example:
-
-megacc -a myMaoFile.mao -d mySequenceAlignment.fas -o myOutput
-
-To get started, checkout MEGA7-CC-User-Manual.pdf, found in the
-documentation folder of the installed package.
-
-This SlackBuild just repackages the binaries provided from upstream.
-There are no 32bit executables.
-
-
-NOTE!  IMPORTANT!
-
-MEGA-CC is not free software.  Your use of MEGA-CC is subject to the
-licence agreement at:
-
-  http://www.megasoftware.net/show_eua
-
-SlackBuilds.org thanks Prof. Kumar for permission to use the direct
-download URL.
-
-
-Citing:
-
-MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger
-datasets (Kumar, Stecher, and Tamura 2015).
diff --git a/academic/megacc/References b/academic/megacc/References
deleted file mode 100644
index c05107d41d..0000000000
--- a/academic/megacc/References
+++ /dev/null
@@ -1,25 +0,0 @@
-http://www.megasoftware.net/citations
-
-MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger
-datasets
-Kumar S, Stecher G, and Tamura K (2016)
-Molecular Biology and Evolution 33:1870-1874
-
-MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
-Tamura K, Stecher G, Peterson D, Filipski A, and Kumar S (2013)
-Molecular Biology and Evolution 30:2725-2729
-
-MEGA-CC: Computing Core of Molecular Evolutionary Genetics Analysis
-Program for Automated and Iterative Data Analysis
-Kumar S, Stecher G, Peterson D, and Tamura K (2012)
-Bioinformatics 28:2685-2686
-
-MEGA5: Molecular Evolutionary Genetic Analysis using Maximum Likelihood,
-Evolutionary Distance, and Maximum Parsimony Methods
-Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S (2011)
-Molecular Biology and Evolution 28:2731-2739
-
-MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version
-4.0
-Tamura K, Dudley J, Nei M and Kumar S (2007)
-Molecular Biology and Evolution 24:1596-1599
diff --git a/academic/megacc/doinst.sh b/academic/megacc/doinst.sh
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index 5fb28930db..0000000000
--- a/academic/megacc/doinst.sh
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@@ -1,3 +0,0 @@
-if [ -x /usr/bin/update-desktop-database ]; then
-  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
-fi
diff --git a/academic/megacc/megacc.SlackBuild b/academic/megacc/megacc.SlackBuild
deleted file mode 100644
index c7d2689033..0000000000
--- a/academic/megacc/megacc.SlackBuild
+++ /dev/null
@@ -1,100 +0,0 @@
-#!/bin/sh
-
-# Slackware build script for megacc
-
-# Copyright 2017 Petar Petrov slackalaxy@gmail.com
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-#    notice, this list of conditions and the following disclaimer.
-#
-#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
-#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-PRGNAM=megacc
-VERSION=${VERSION:-7.0.26_1}
-TARVER=7.0.26-1
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-
-if [ -z "$ARCH" ]; then
-  case "$( uname -m )" in
-    i?86) ARCH=i586 ;;
-    arm*) ARCH=arm ;;
-       *) ARCH=$( uname -m ) ;;
-  esac
-fi
-
-CWD=$(pwd)
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-set -e
-
-# Stop if processor architecture is not supported
-if [ "$ARCH" != "x86_64" ]; then
-  printf "\n\n$ARCH is not supported... \n"
-  exit 1
-fi
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $PRGNAM-$VERSION
-mkdir $PRGNAM-$VERSION
-cd $PRGNAM-$VERSION
-tar xvf $CWD/$PRGNAM-${TARVER}.${ARCH}.tar.gz
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-# Install the two binaries
-install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM
-install -D -m755 megaproto $PKG/usr/bin/megaproto
-
-# Place the man page in its proper location
-install -D -m644 $PRGNAM.1 $PKG/usr/man/man1/$PRGNAM.1
-
-find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
-  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
-
-find $PKG/usr/man -type f -exec gzip -9 {} \;
-for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
-
-# Include examples
-mkdir -p $PKG/usr/share/$PRGNAM
-cp -a Examples/* $PKG/usr/share/$PRGNAM
-
-# Menu entry for Megaproto
-mkdir -p $PKG/usr/share/{applications,pixmaps}
-cp $CWD/megaproto.desktop $PKG/usr/share/applications
-cp $CWD/megaproto.png $PKG/usr/share/pixmaps
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  Mega7.chm MEGA7-CC-User-Manual.pdf readme.txt usageAgreement.txt \
-  $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-cat $CWD/doinst.sh > $PKG/install/doinst.sh
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/megacc/megacc.info b/academic/megacc/megacc.info
deleted file mode 100644
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@@ -1,10 +0,0 @@
-PRGNAM="megacc"
-VERSION="7.0.26_1"
-HOMEPAGE="http://www.megasoftware.net/"
-DOWNLOAD="UNSUPPORTED"
-MD5SUM=""
-DOWNLOAD_x86_64="http://www.megasoftware.net/releases/megacc-7.0.26-1.x86_64.tar.gz"
-MD5SUM_x86_64="29638dd06536b84dd2c7b8fb19541c9e"
-REQUIRES=""
-MAINTAINER="Petar Petrov"
-EMAIL="slackalaxy@gmail.com"
diff --git a/academic/megacc/megaproto.desktop b/academic/megacc/megaproto.desktop
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@@ -1,8 +0,0 @@
-[Desktop Entry]
-Categories=Education;
-Comment=Molecular evolutionary genetics analysis
-Exec=megaproto
-Icon=megaproto
-Name=MEGA Proto
-StartupNotify=false
-Type=Application
diff --git a/academic/megacc/megaproto.png b/academic/megacc/megaproto.png
deleted file mode 100644
index 92fec00c7b..0000000000
--- a/academic/megacc/megaproto.png
+++ /dev/null
diff --git a/academic/megacc/slack-desc b/academic/megacc/slack-desc
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@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct.  It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
-      |-----handy-ruler------------------------------------------------------|
-megacc: megacc (Molecular Evolutionary Genetics Analysis)
-megacc:
-megacc: Sophisticated and user-friendly software suite for analyzing DNA
-megacc: and protein sequence data from species and populations.
-megacc:
-megacc: Home: http://www.megasoftware.net/
-megacc: Citations: http://www.megasoftware.net/citations
-megacc:
-megacc:
-megacc:
-megacc: