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authorPetar Petrov <ppetrov@paju.oulu.fi>2011-09-03 11:02:20 -0300
committerNiels Horn <niels.horn@slackbuilds.org>2011-09-03 11:02:20 -0300
commitbb2dfa6f86fe328a54249df007ab1eb2f2d7852f (patch)
tree3c0410caa21063aa9d7efe011684e7097b19a8b1 /academic/lalnview/lalnview.SlackBuild
parent13c475804d4add086c759e2c9cdef854f50be58a (diff)
downloadslackbuilds-bb2dfa6f86fe328a54249df007ab1eb2f2d7852f.tar.gz
academic/lalnview: Added (Visualize local alignments)
Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>
Diffstat (limited to 'academic/lalnview/lalnview.SlackBuild')
-rw-r--r--academic/lalnview/lalnview.SlackBuild81
1 files changed, 81 insertions, 0 deletions
diff --git a/academic/lalnview/lalnview.SlackBuild b/academic/lalnview/lalnview.SlackBuild
new file mode 100644
index 0000000000..7b2f004dd3
--- /dev/null
+++ b/academic/lalnview/lalnview.SlackBuild
@@ -0,0 +1,81 @@
+#!/bin/sh
+
+# Slackware build script for lalnview
+# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
+# hereby submitted to the public domain
+
+# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
+# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
+# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+
+PRGNAM=lalnview
+VERSION=${VERSION:-3.0}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+ case "$( uname -m )" in
+ i?86) ARCH=i486 ;;
+ arm*) ARCH=arm ;;
+ *) ARCH=$( uname -m ) ;;
+ esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i486" ]; then
+ SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+ LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+ SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+ LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+ SLKCFLAGS="-O2 -fPIC"
+ LIBDIRSUFFIX="64"
+else
+ SLKCFLAGS="-O2"
+ LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM-$VERSION
+mkdir $PRGNAM-$VERSION
+cd $PRGNAM-$VERSION
+tar xvf $CWD/sources20050615.tar
+chown -R root:root .
+find . \
+ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
+
+OPT="$SLKCFLAGS" \
+ make
+install -D -m755 lalnview $PKG/usr/bin/lalnview
+
+find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
+ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+
+# Menu item and icon (couldn't find an icon, so i made one myself. I know it sucks.)
+mkdir -p $PKG/usr/share/{applications,pixmaps}
+cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
+cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp lalnview.help $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}