academic/klu: Updated for version 1.3.8.

Signed-off-by: Kyle Guinn <elyk03@gmail.com>

1 files changed, 277 insertions, 0 deletions

diff --git a/academic/klu/patches/autotoolize.diff b/academic/klu/patches/autotoolize.diff
new file mode 100644
index 0000000000..423e84572c
--- /dev/null
+++ b/academic/klu/patches/autotoolize.diff
@@ -0,0 +1,277 @@
+diff --git a/Demo/Makefile.am b/Demo/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Demo/Makefile.am
+@@ -0,0 +1,46 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(AMD_CFLAGS) $(COLAMD_CFLAGS) $(BTF_CFLAGS) $(CHOLMOD_CFLAGS)
++LDADD = $(top_builddir)/Source/libklu.la
++
++EXTRA_DIST = \
++	klu_simple.out \
++	kludemo.out
++
++# Disable the .out implicit pattern rule.  Prevents GNU make from
++# adding bogus dependencies for the .out files listed above.
++%.out: %
++
++check_PROGRAMS = klu_simple
++TESTS = klu_simple
++klu_simple_SOURCES = klu_simple.c
++
++if CHOLMOD
++check_PROGRAMS += kludemo kluldemo
++
++kludemo_SOURCES = kludemo.c
++kludemo_LDADD = $(LDADD) $(CHOLMOD_LIBS) -lm
++
++kluldemo_SOURCES = kluldemo.c
++kluldemo_LDADD = $(LDADD) $(CHOLMOD_LIBS) -lm
++
++MATRICES = \
++	$(top_srcdir)/Matrix/1c.mtx \
++	$(top_srcdir)/Matrix/arrowc.mtx \
++	$(top_srcdir)/Matrix/arrow.mtx \
++	$(top_srcdir)/Matrix/impcol_a.mtx \
++	$(top_srcdir)/Matrix/w156.mtx \
++	$(top_srcdir)/Matrix/ctina.mtx
++
++check-local: kludemo kluldemo $(MATRICES)
++	-./kludemo < $(top_srcdir)/Matrix/1c.mtx
++	-./kludemo < $(top_srcdir)/Matrix/arrowc.mtx
++	-./kludemo < $(top_srcdir)/Matrix/arrow.mtx
++	-./kludemo < $(top_srcdir)/Matrix/impcol_a.mtx
++	-./kludemo < $(top_srcdir)/Matrix/w156.mtx
++	-./kludemo < $(top_srcdir)/Matrix/ctina.mtx
++	-./kluldemo < $(top_srcdir)/Matrix/1c.mtx
++	-./kluldemo < $(top_srcdir)/Matrix/arrowc.mtx
++	-./kluldemo < $(top_srcdir)/Matrix/arrow.mtx
++	-./kluldemo < $(top_srcdir)/Matrix/impcol_a.mtx
++	-./kluldemo < $(top_srcdir)/Matrix/w156.mtx
++	-./kluldemo < $(top_srcdir)/Matrix/ctina.mtx
++endif
+diff --git a/Doc/Makefile.am b/Doc/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Doc/Makefile.am
+@@ -0,0 +1,51 @@
++EXTRA_DIST = \
++	ChangeLog \
++	License.txt \
++	lesser.txt
++
++dist_noinst_DATA = KLU_UserGuide.tex KLU_UserGuide.bib
++dist_pdf_DATA = KLU_UserGuide.pdf palamadai_e.pdf
++
++SRC = \
++	klu_h.tex \
++	btf_h.tex \
++	klu_simple_c.tex
++
++KLU_UserGuide.pdf KLU_UserGuide.aux: $(SRC)
++.INTERMEDIATE: KLU_UserGuide.aux $(SRC)
++
++define verbatim =
++echo '\begin{verbatim}' > $@
++expand -8 $< >> $@
++echo '\end{verbatim}' >> $@
++endef
++
++klu_h.tex: $(top_srcdir)/Include/klu.h
++	$(verbatim)
++
++# FIXME:  We don't know the location of btf.h.
++# Insert a placeholder for now.
++#btf_h.tex: /usr/include/btf.h
++#	$(verbatim)
++btf_h.tex:
++	echo '\begin{verbatim}' > $@
++	echo 'See your btf.h local install' >> $@
++	echo '\end{verbatim}' >> $@
++
++klu_simple_c.tex: $(top_srcdir)/Demo/klu_simple.c
++	$(verbatim)
++
++TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
++BIB = BIBINPUTS="$(srcdir):" bibtex
++%.pdf: %.tex %.bbl
++	$(TEX) $*
++	while grep -q "Rerun to get cross-references right" $*.log; do \
++		$(TEX) $*; \
++	done
++%.bbl: %.aux %.bib
++	$(BIB) $*
++%.aux: %.tex
++	$(TEX) $*
++
++CLEANFILES = *.aux *.bbl *.blg *.log *.toc $(SRC)
++MAINTAINERCLEANFILES = $(dist_pdf_DATA)
+diff --git a/Include/Makefile.am b/Include/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Include/Makefile.am
+@@ -0,0 +1 @@
++pkginclude_HEADERS = klu.h klu_internal.h klu_version.h
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,4 @@
++SUBDIRS = Include Source User Matrix Demo Doc
++EXTRA_DIST = README.txt
++
++pkgconfig_DATA = klu.pc
+diff --git a/Matrix/Makefile.am b/Matrix/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Matrix/Makefile.am
+@@ -0,0 +1,11 @@
++dist_noinst_DATA = \
++	1c.mtx \
++	GD99_cc.mtx \
++	arrow.mtx \
++	arrowc.mtx \
++	ctina.mtx \
++	impcol_a.mtx \
++	one.mtx \
++	onec.mtx \
++	two.mtx \
++	w156.mtx
+diff --git a/Source/Makefile.am b/Source/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Source/Makefile.am
+@@ -0,0 +1,40 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(AMD_CFLAGS) $(COLAMD_CFLAGS) $(BTF_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
++
++noinst_LTLIBRARIES = libklud.la libkluz.la libklul.la libkluzl.la
++
++KLUSRC = \
++	klu.c \
++	klu_diagnostics.c \
++	klu_dump.c \
++	klu_extract.c \
++	klu_factor.c \
++	klu_free_numeric.c \
++	klu_kernel.c \
++	klu_refactor.c \
++	klu_scale.c \
++	klu_solve.c \
++	klu_sort.c \
++	klu_tsolve.c
++
++CKLUSRC = \
++	klu_analyze.c \
++	klu_analyze_given.c \
++	klu_defaults.c \
++	klu_free_symbolic.c \
++	klu_memory.c
++
++libklud_la_SOURCES = $(KLUSRC) $(CKLUSRC)
++
++libkluz_la_SOURCES = $(KLUSRC)
++libkluz_la_CPPFLAGS = $(AM_CPPFLAGS) -DCOMPLEX
++
++libklul_la_SOURCES = $(KLUSRC) $(CKLUSRC)
++libklul_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
++
++libkluzl_la_SOURCES = $(KLUSRC)
++libkluzl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG -DCOMPLEX
++
++lib_LTLIBRARIES = libklu.la
++libklu_la_SOURCES =
++libklu_la_LIBADD = libklud.la libkluz.la libklul.la libkluzl.la $(AMD_LIBS) $(COLAMD_LIBS) $(BTF_LIBS) $(SUITESPARSECONFIG_LIBS)
++libklu_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION)
+diff --git a/User/Makefile.am b/User/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/User/Makefile.am
+@@ -0,0 +1,12 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(AMD_CFLAGS) $(COLAMD_CFLAGS) $(BTF_CFLAGS) $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
++
++EXTRA_DIST = README.txt
++
++if CHOLMOD
++pkginclude_HEADERS = klu_cholmod.h
++
++lib_LTLIBRARIES = libklu_cholmod.la
++libklu_cholmod_la_SOURCES = klu_cholmod.c klu_l_cholmod.c
++libklu_cholmod_la_LIBADD = $(CHOLMOD_LIBS)
++libklu_cholmod_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION)
++endif
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,54 @@
++#                                               -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.69])
++AC_INIT([KLU],[1.3.8],[DrTimothyAldenDavis@gmail.com],[klu],[http://www.suitesparse.com/])
++AC_CONFIG_SRCDIR([Source/klu.c])
++AC_CONFIG_HEADERS([config.h])
++AM_INIT_AUTOMAKE([foreign])
++LT_INIT
++
++# Checks for programs.
++PKG_PROG_PKG_CONFIG
++AC_PROG_INSTALL
++AC_PROG_CC
++
++AS_VAR_SET([LIBS_SAVED], [$LIBS])
++
++# Checks for libraries.
++AC_CHECK_LIB([m], [sqrt])
++
++PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig])
++PKG_CHECK_MODULES([AMD], [amd])
++PKG_CHECK_MODULES([COLAMD], [colamd])
++PKG_CHECK_MODULES([BTF], [btf])
++PKG_CHECK_MODULES([CHOLMOD], [cholmod],
++	[AS_VAR_SET([have_cholmod], [yes])],
++	[AS_VAR_SET([have_cholmod], [no])
++	 AC_MSG_WARN([$CHOLMOD_PKG_ERRORS, disabling some functionality])])
++
++# Checks for header files.
++AC_CHECK_HEADERS([limits.h stdlib.h])
++
++# Checks for typedefs, structures, and compiler characteristics.
++AC_TYPE_SIZE_T
++
++# Checks for library functions.
++AC_CHECK_FUNCS([sqrt])
++
++AS_VAR_SET([LIBS], [$LIBS_SAVED])
++
++AM_CONDITIONAL([CHOLMOD], [test "x$have_cholmod" = "xyes"])
++
++PKG_INSTALLDIR
++AC_CONFIG_FILES([
++	klu.pc
++	Makefile
++	Demo/Makefile
++	Doc/Makefile
++	Include/Makefile
++	Matrix/Makefile
++	Source/Makefile
++	User/Makefile
++])
++AC_OUTPUT
+diff --git a/klu.pc.in b/klu.pc.in
+new file mode 100644
+--- /dev/null
++++ b/klu.pc.in
+@@ -0,0 +1,13 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: @PACKAGE_NAME@
++Description: Sparse LU factorization for circuit simulation
++Version: @PACKAGE_VERSION@
++URL: @PACKAGE_URL@
++Requires.private: suitesparseconfig amd colamd btf
++Libs: -L${libdir} -lklu
++Libs.private: -lm
++Cflags: -I${includedir}/klu