academic/jalview: Added (A Sequence Alignment Editor and Viewer)

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>

1 files changed, 28 insertions, 0 deletions

diff --git a/academic/jalview/References b/academic/jalview/References
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+Peer reviewed publications
+
+If you use Jalview 2 in your work, please cite Waterhouse et al. 
+(2009). 
+To cite an analysis performed with JABAWS, please use Troshin et al. 
+(2011).
+
+Troshin PV, Procter JB, Barton GJ (2011) Java bioinformatics analysis
+web services for multiple sequence alignment--JABAWS:MSA.
+Bioinformatics 27: 2001-2002.
+http://bioinformatics.oxfordjournals.org/content/27/14/2001
+
+Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ (2009)
+Jalview Version 2-a multiple sequence alignment editor and analysis
+workbench. Bioinformatics 25: 1189-1191.
+http://bioinformatics.oxfordjournals.org/content/25/9/1189
+
+Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, et al.
+(2006) MACSIMS: multiple alignment of complete sequences information
+management system. BMC Bioinformatics 7: 318.
+http://www.biomedcentral.com/1471-2105/7/318
+
+Clamp M, Cuff J, Searle SM, Barton GJ (2004) The Jalview Java
+alignment editor. Bioinformatics 20: 426-427.
+http://bioinformatics.oxfordjournals.org/content/20/3/426
+
+Take a look at the citations for the Jalview 2 paper in PubMedCentral:
+http://www.ncbi.nlm.nih.gov/pubmed?linkname=pubmed_pubmed_citedin&from_uid=19151095